Populus euphratica (Euphrates poplar): 105114478
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Entry
105114478 CDS
T05872
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
peu
Populus euphratica (Euphrates poplar)
Pathway
peu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
peu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105114478
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
peu03019
]
105114478
Enzymes [BR:
peu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
105114478
Messenger RNA biogenesis [BR:
peu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
105114478
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
105114478
NCBI-ProteinID:
XP_011009330
UniProt:
A0AAJ6TEA9
LinkDB
All DBs
Position
Unknown
AA seq
626 aa
AA seq
DB search
MVAVSPLLRRRLLSTSVTRTHHKPQQQWSIKQVTKSNFADTLEDIKSHVSNSDFVAVSLQ
NTGFFSAPWQRVSPFDTADTAYLKAKYAAERFQVLHFAVCPFTVRASKVTAYPYNFHLFP
RPELKMEMPSYSFYCQTSSLISMARQGFDFNSCINDGISYLSREQESAAKIQMGNPILAK
NVTESTSTLSVADSVFIERIKSHIKNWKKACKETSTRKEGNQIQDALVRSLRKLVLGNEE
YDSRPCMNIDVCSERQAQLVVEMLQEFADDVVPLIIPAKGGAMQAVRVVLTSSKEDKDLL
QGKLQNDEQELKKKVRGFREVIDLISASQKPVVSHGSLNDLTLIHSKFIAPLPPTVDEFM
CSLRLAFPLVIDVNHLMKEINPLRKVTSIPSAISQLKNRFFTPIDMEIPCQAMENEDTIL
GQNVVKICELFARLCSILKIDPADVKSDKEKRASALEAYANIFRPFCTASEEPIDGEIKI
WTNNTRTVSCEDLVFLWGFGDRVTAGVLKSLLQESHEAFSKEFDVRLVDTSCAIVIFWQH
GLSETFLNTMNKCSDMCGPLREMVSEGLRAAGYETYNRACRLGFWESSLADSLDRALANS
DCASEADSKTKCSDRCNEWIINLDDL
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atggttgccgtctccccgctgctgcgaaggcgcctgttaagcaccagcgtgactagaacc
caccataaacctcaacagcaatggagcataaagcaagtcacgaaatcaaacttcgctgac
actcttgaggacataaaatcccatgtctccaattccgattttgtggccgtgtccttgcaa
aacaccggcttcttctccgccccttggcaacgcgtctccccttttgacaccgccgacacg
gcttacttaaaagccaagtatgccgctgaaaggttccaggttcttcatttcgctgtttgc
cccttcactgtcagggcttctaaagtcactgcctacccatataattttcacttgttccca
agacctgaactaaagatggaaatgccttcttacagtttttattgtcaaacctcgtctttg
atatctatggctcgccaaggttttgactttaattcttgcataaatgatggtatctcatac
ttgtccagagaacaagaatctgctgcaaaaattcagatggggaatccaatacttgcaaag
aatgtgacagaatccacttctaccctttctgttgctgattctgtattcattgaaaggatt
aaatcacacattaaaaattggaagaaagcatgtaaagaaactagcacaaggaaagaaggc
aaccaaattcaagatgctctggtcagatccctaagaaaactcgttctaggaaatgaagag
tatgattcaagaccgtgcatgaatatagatgtttgcagcgaacgccaagcacaacttgtg
gttgagatgttgcaagaatttgctgatgatgttgttcctttaataattccagcaaagggt
ggagcaatgcaggcagttcgtgttgttttaacaagttcgaaggaggataaagatcttctt
cagggaaagcttcaaaatgatgaacaggaactaaagaaaaaggtccgtggctttcgagag
gtgatcgacttgatatctgcttctcagaagcctgttgtctcacatggttcccttaatgat
ttaacattgattcattcaaaattcatagctcccctgcctcctacagtggatgagtttatg
tgttccttgcgtttggctttccccctggtaattgatgtcaaccatctgatgaaagagatc
aatcctctgagaaaagttactagtataccttcagctatttctcaattaaagaatcggttc
tttacacctattgatatggaaattccatgccaagctatggaaaatgaagacactattctt
gggcaaaatgttgtgaagatttgtgaattgtttgctaggctatgcagtatactcaaaatc
gatcctgctgatgtcaaatcagataaagaaaaacgggcttcagcccttgaagcttacgca
aatattttcagaccattctgtactgcatctgaagaaccaatagatggagaaatcaaaata
tggactaacaacacaagaactgtgagctgtgaggatttagttttcttgtggggatttggg
gatagggtgacagctggggtactaaagagcctgctccaagagtctcatgaagctttctcc
aaggaatttgatgtgcgattggtagatactagctgcgccattgtgattttctggcaacat
gggttgtcagaaacttttctgaacaccatgaataagtgctcagacatgtgcggacctttg
agggagatggtttcggaaggtctaagagctgcagggtatgagacttacaatagagcttgt
aggttaggtttctgggagtcaagtttagcagattccttggacagagccttggctaactct
gactgtgcttccgaagctgattctaaaacgaagtgttcagataggtgcaatgaatggata
attaacctggatgatctctga
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