Populus euphratica (Euphrates poplar): 105115050
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Entry
105115050 CDS
T05872
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
peu
Populus euphratica (Euphrates poplar)
Pathway
peu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
peu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105115050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
peu03019
]
105115050
Messenger RNA biogenesis [BR:
peu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105115050
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105115050
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
DUF5646
RuvB_N
DUF4407
Motif
Other DBs
NCBI-GeneID:
105115050
NCBI-ProteinID:
XP_011010122
UniProt:
A0AAJ6TF02
LinkDB
All DBs
Position
Unknown
AA seq
896 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALVDARKTIEKEMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNVVGELESQIDAFEAEIEGLTVKKGKTRPPRLTHLEASITRHKL
HIKKLELILRLLDNDELSPEEVNDVKDFLDDYVERNQEDFDDFSDVDELYNSLPLDNLES
LEDLVIIGPPGLGKGAPAQVLKTSLGITAPQAPQTPATVASPPHQSVVGQEQANDTASLD
SNSPAKSGMVGSSAASTPTGNHAPISVNVQVQTLPSLLAVSPTLPGSSSVRGVLENAASA
NPSHVTLTNAANSAKDEEIGFPGHRSSSPSLVDTGLARGIGRGGLSSQPSSSISLSPGVI
PSNGALGSVPSASDIAKRNVLGTDDRLGSGGMVQPSASPLSNRMILPHASKASDGTGAVD
SSIAGDAATLSGRVFSPLVTGMQWRPGSSFQNQNEPGQFRARTEIAPDQREKFLQRLQQV
QQQGHSNILGMPPLAGGNHKQFPTQQNPLLQQFNSQSSSISQGSLGIGVQAAAFNTVTSA
ALQQPNSIIHQQASQQVVMSSSAKDAEAGHPSVEEQQLKQNLPEDSTTESAPTSGHGKSL
VNEDELTASYAMDTSLQAGASGSLTEPVQVPRDIDLSPGQPLQSSQPSSSLGVIGRRSVS
DLGAIGDNINGSAVNVGAIHNQSYNFEMLDAAYHKLPQPKDSERARSYIPRHPAATPPSY
PQVQAPMASNPAFWERLSMDSVGTDTLFFAFYYQQNTYQQYLAAKELKRQSWRYHRKYNT
WFQRHEEPKVTTDEYEQGTYVYFDFHVGNDEKPGWCQRIKTEFTFQYNYLEDELSV
NT seq
2691 nt
NT seq
+upstream
nt +downstream
nt
atgggagcaagtcgcaagctacaaggcgagatcgatcgcgttctcaagaaagttcaagaa
ggagtcgacgtttttgatagtatctggaacaaggtttatgatacagataatgcgaatcaa
aaggagaagtttgaggcagacttgaagaaggaaatcaagaaactgcagagatatagggac
caaatcaagacatggattcaatccagtgagatcaaggataagaaggttagtgcatcttac
gagcaggctctagtggatgctcggaagactattgagaaagaaatggaaagatttaagata
tgcgagaaggaaacaaagacaaaagcattttccaaagaaggtttgggccaacaacccaaa
actgatccaaaggagaaagctaaatcagaaacaagggattggttgaataatgtggttggg
gaactggaatctcagattgatgcctttgaagctgagattgaggggctcactgtcaagaaa
ggaaagacaaggccacccagactgacacatttagaggcatccatcacacggcataaactt
catataaagaaattagagttgatcttgaggctactagacaatgatgaattgagtcccgag
gaggttaatgatgttaaagacttcctggatgactatgtggaacgtaatcaggaagatttt
gatgattttagtgatgttgatgagctgtacaactcattaccattagacaacttggagtct
cttgaagacctggttataattggtcctcctggtcttgggaagggtgctcctgctcaagtc
ttgaagacttctttgggaataacggctcctcaggctccccaaacacctgccactgttgca
tctccgcctcatcagagtgttgttggtcaagagcaagccaatgatactgcttcactagat
agtaattctcctgccaaaagtggtatggttggttcttcagctgcatcaacaccaactggg
aaccatgcacctatttctgtgaatgttcaggttcagacattgcctagtcttttagcagtt
tctcccactcttcctggttcatcttctgttcgaggtgtcttggaaaatgctgcttctgct
aatccttctcatgtaaccctgaccaatgctgccaattctgcaaaggatgaagaaattggc
ttccctggccatagatcatcatcaccttctcttgttgatactggactagcaaggggcatt
ggtagaggtggcctctctagccagccctcatctagtatctccctcagtcctggtgtaatt
cctagtaatggagctcttggttcagtaccttcagcttctgacattgcaaagagaaatgtt
ttgggaactgacgatagacttgggagtggtggaatggtgcagccctcggcttctccacta
agtaaccgaatgatcttgcctcatgctagcaaggcaagtgatggaactggtgcggttgat
tctagcattgctggtgatgctgctactctgagtggcagagttttctctcctttggtcact
ggcatgcaatggagacctgggagttcctttcaaaatcagaatgaaccgggccaatttcgt
gcaagaactgaaatagctcctgatcagagggagaaattcttacagcgtcttcagcaagtc
cagcaacaaggtcacagtaacattcttggcatgccacctcttgccggtgggaatcataag
cagtttcccacccaacaaaacccacttttgcagcagtttaattctcagagttcatccatc
tctcaaggtagtttgggaattggagttcaggcagcagctttcaatactgttacatctgct
gccttacagcagcctaattccatcatccatcagcaggctagtcagcaagttgtgatgtct
agcagtgcgaaagatgcagaggctggccatccgtcagttgaggagcagcagctaaagcag
aatttacctgaggattcaaccactgaatctgcccctacatctgggcatggcaaaagtctt
gtaaatgaggacgaactgacagcttcatatgcaatggatacttctctgcaggctggagca
tctggttccttgacagagcctgtacaagtgccaagagatatagatctctctccagggcaa
cccctacaatccagtcaaccatctagcagcctaggtgttattggccggagaagcgtctcc
gaccttggtgcaattggtgataatatcaatggttctgctgtaaatgttggggcaatccat
aatcagtcatacaattttgagatgcttgatgctgcatatcacaagcttcctcaaccgaaa
gactcggaacgagctaggagctatattccgaggcaccctgcagcaacaccccctagctat
cctcaagttcaggcaccaatggcaagtaatcctgcattctgggaacggttaagcatggat
agtgttggcactgacaccttgttctttgctttttactaccaacagaatacatatcagcaa
tatctggctgcaaaagaactgaagaggcaatcttggagataccacagaaaatacaacacc
tggtttcaacggcatgaggagccaaaagttactactgatgaatatgaacaggggacatat
gtgtattttgatttccatgttggcaatgacgaaaaaccaggatggtgccaaagaatcaag
acagagttcacttttcagtataactatcttgaagatgaactcagtgtctag
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