Populus euphratica (Euphrates poplar): 105116300
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Entry
105116300 CDS
T05872
Name
(RefSeq) LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase 14-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
peu
Populus euphratica (Euphrates poplar)
Pathway
peu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
peu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105116300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
peu03041
]
105116300
03009 Ribosome biogenesis [BR:
peu03009
]
105116300
Enzymes [BR:
peu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105116300
Spliceosome [BR:
peu03041
]
Complex A
U1 snRNP components
U1 related factors
105116300
Complex B
105116300
Ribosome biogenesis [BR:
peu03009
]
Eukaryotic type
Pre-60S particles
Helicases
105116300
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
105116300
NCBI-ProteinID:
XP_011011886
UniProt:
A0AAJ6TJI7
LinkDB
All DBs
Position
Unknown
AA seq
788 aa
AA seq
DB search
MTAAATASSAGPRYAPDDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPITSALPPKS
SSSVPIIPSVQVEQSSSHRGYSPDDRYGRAHNAGSKADAVTRSSQSSRDTAIQSENVPNG
KANGVSARGHGSSSGGSGLTGEAYRRRHEITVTGDEVPPPLTSFEATGFPSEILKEVHKA
GFSSPTPIQAQSWPVALQSRDIVAVAKTSSGKTLGYLIPGFIHLKRFRNDPQLGPTVLVL
SPTRELATQIQDEAVKFGRSSRISCTCLYGGAPKGPQLKELDRGADIVVATPGRLNDILE
MRRVSLNQVKYLVLDEADHMLDMGFEPQIRKIVKEVPARRQTLMYTATWPKEVRKIAADL
LVNPVQVNIGNIDELVANKSITQHVELLAPLEKHRRLDQILRSQEPGSKIIIFCSTKKMC
DQLARNLTRQFGAAAIHGDKSQSERDHVLSQFRTGRSPILVATDVAARGLDIKDIRVVVN
YDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDAKYASDLIKVLQGANQLVPPEIRAMA
SRGGGVMGRFRRWGSGSGGRDGGRGGHSDFGYGGRDCGRGSWGVSNSSSSRPERGGGCGL
DHESQARYDRGYSDGYDKGHNHNRSPDKRSGWGDRSKSLNRDRSCSRSPDRYDRAPPVXS
FHQAMMEKGQASPSNQIQHERSRSPCAAVVGGSSFHKAVMERGRSPCHGSGGSFHKEMME
LGRSSSYHAQQERGRSLRSGXINAGPRSGHDSRGFNAGPHSYFGEEEEEGMIPADEDARM
PPDDGMHL
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atgacggctgcagcaactgcttcttccgcgggtccacgatatgcaccggacgaccctact
ctccccaaaccatggagaggtctagtcgatggaaaaaccggctacctttatttttggaat
cctgagaccaatgttactcagtatgagaggcctattacctctgctcttccgccaaagtct
tcttcttcagtacccatcattccttctgttcaagtcgagcagtcttcttctcatcgaggg
tatagccctgatgataggtatggaagagcccacaatgctggatcaaaagctgatgctgtt
accaggagtagtcagagttcaagagatacagcaattcaatctgagaatgtcccaaatgga
aaagccaatggagtttctgctagaggacacggatcatcatctggaggaagtggtttgact
ggagaggcttatcgccgccgccatgaaattactgtcactggagatgaggtgccccctcca
ctaacatcatttgaagctactggctttccttctgagattttgaaagaggtacacaaagct
ggtttctcttcaccaactccaattcaggcacaatcatggccggttgctttgcagagtaga
gatatagtggctgttgccaagaccagttcaggaaaaacattaggttaccttattccaggc
tttatccatctcaagcgcttccgtaatgaccctcaactgggtccaactgtgttggtattg
tctccaacaagagagttagcaacacagatacaagatgaagctgtgaagtttggaaggtca
tcaagaatttcctgcacgtgcttgtatggaggagcaccaaagggtccccagttaaaagaa
ctagatagaggagcagatattgtggttgccactcctggtcgcttgaatgacattcttgaa
atgaggagagttagcctcaatcaggttaaataccttgtattagatgaggctgatcacatg
ttggacatgggatttgaaccccagatacgaaagattgtaaaggaggtgcctgctcgtcgc
cagaccctcatgtacactgcaacttggccaaaggaagttaggaaaattgcagcagatcta
ttggtcaatcctgttcaggttaatatcggcaacatagatgagcttgtggcaaacaagtca
atcacacagcatgtggaattattggcacccttggagaaacatagacggttggaccagata
ttgcggtcccaggaacctggatcgaagattattattttttgctcaacaaagaagatgtgt
gatcaacttgctcgcaaccttacccgccaatttggagctgctgctattcatggcgacaaa
tctcagagtgagagggatcatgttctgagtcagttccgtactgggaggtctccaattctt
gtagccactgatgtagctgctcgaggactggatatcaaagatatcagagtggttgtcaat
tacgacttccctactggcgtggaagattatgttcataggattgggagaacagggagggca
ggggccactggagtggcctacacgttctttggtgaccaagatgcaaagtatgcctcagat
cttatcaaagttttgcaaggagcaaatcagctagttcctccagagatacgtgctatggct
tcacgtggtggaggggtgatgggaaggtttagacgttggggctctggttctggtggtcgt
gatggaggccgtggtggacatagtgattttggatacggtggaagagattgtggaaggggt
agttggggagtttctaattcctcttccagcagaccagaacgaggtggaggctgtggactt
gaccatgagtcgcaggccaggtatgaccggggttacagtgatggatatgataaaggccac
aatcacaatcggagccctgataagcgatcaggttggggtgatcgcagtaaaagtttgaac
cgtgatagaagctgcagtcggagcccagacaggtatgatagggctccaccagtgtgaagt
tttcaccaggcaatgatggaaaagggtcaggcatccccatctaatcaaattcagcatgag
aggtctcgatccccgtgtgctgctgttgttggtggtagcagttttcacaaggcagtcatg
gaaagaggtcgatccccttgtcatggtagtggtggcagtttccataaggaaatgatggaa
ctaggtcgatcatcatcataccatgcacagcaggagcgagggagatcactgagaagtgga
tgaattaacgctgggccacgttctggtcatgatagcagaggatttaatgctggacctcat
tcttattttggagaagaagaggaggaaggaatgattccagctgatgaagatgccaggatg
ccaccggatgatggcatgcatctatga
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