Populus euphratica (Euphrates poplar): 105116307
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Entry
105116307 CDS
T05872
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
peu
Populus euphratica (Euphrates poplar)
Pathway
peu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
peu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105116307
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
peu03021
]
105116307
03019 Messenger RNA biogenesis [BR:
peu03019
]
105116307
Transcription machinery [BR:
peu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
105116307
Messenger RNA biogenesis [BR:
peu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
105116307
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
Torus
zf-CCCH_2
zf-CCCH_12
MUCL1
PL48
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
105116307
NCBI-ProteinID:
XP_011011896
UniProt:
A0AAJ6XAZ5
LinkDB
All DBs
Position
Unknown
AA seq
692 aa
AA seq
DB search
MEDPEGVLSFDFEGGLDSGPTNPSASMAAIPSDNQGSAMAAAPNTATTGASTSNTTANNS
SDTGAADMQAGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLYGECREQ
DCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVVEAVQKTQQLNSYNYGNS
NKFFQQRTAGFPQQIEKAPITIIKPSGTESANLQQQQQQPQTQAQAPNLPNGQQQPNPLN
RIATTLPQGISRYFIVKSCNLENLELSVQQGVWATQRSNEPKLNEAFDSAENVILIFSVN
RTRHFQGCAKMTSKIGASVGGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPFN
ENLPVKISRDCQELEPSIGEQLASLLYLEPDSDLMAISVAAEAKREEEKEKGVTPDSGGE
NPDIVPFEDNEEEEEEESEEEVEAFGHPLGAAAQGRGRGRGIMWPPHIPIARGARPIHGM
RAFPPMMMGADGFSYGAVTPDSFGMPDLFGVAPRGFASYGPRFSGDFTGATSGMMFPGRP
SQPGAMFPAGGFGMMMGAGRAPFMGGMGPTASNPLRGLRPGGMFAPLLASSSQNNNRSFK
RDQRAAPSDRIDRHNIESDLVRGAAGESNDETRYPQETYKVSHEDQFGAVNSNRNNESGS
EDEAPRRSRHGEGKKKQRGSEGDANPGSDHKQ
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atggaggacccagagggggttttaagcttcgacttcgagggcggcctcgactcggggccc
acgaaccctagcgcctccatggcagcgatcccatctgacaatcagggatccgcaatggca
gctgcgcccaacaccgcaaccaccggcgccagcaccagtaacaccaccgccaacaacagc
agcgacactggtgcggcggacatgcaggcggggcgacggagcttccggcagaccgtatgt
cggcactggcttcgaagcctttgtatgaaaggcgacgcctgcggattccttcaccaatac
gacaagtctagaatgcctgtatgtcggttttttagactttatggagagtgcagggagcag
gattgcgtttacaagcacaccaatgaagatatcaaggagtgcaatatgtacaagctgggg
ttttgtcccaatggtccagactgcaggtataggcatgcaaagttgcctggacctccacct
ccggttgtagaagctgttcaaaagactcagcagttgaactcttacaattatggaaactct
aacaaattttttcaacaacggactgctggttttccccaacagatagaaaaggctcccatt
accatcataaaaccttcaggaacggaatctgctaatttgcagcagcagcagcagcagcca
cagacacaggcacaggcaccaaatcttccaaatggccagcaacagcctaatccattgaac
agaattgcaacgactttacctcaaggaatatctaggtacttcattgttaagagctgcaac
cttgaaaatttggagttatctgtgcagcaaggagtatgggcaacacaaaggagcaatgaa
cctaaactgaatgaagcttttgactctgctgaaaatgtaatcttgattttctcagtaaac
cggactcggcatttccagggttgtgcaaagatgacatccaaaattggtgcttctgttggt
ggagggaattggaaatatgcacacggaactgcacattatgggaggaatttctcagtcaaa
tggttgaagttgtgtgaactgtccttccacaaaactcgtcacctgagaaacccgttcaat
gagaacttaccagtgaagattagtagagattgtcaagagctagaaccctctattggtgag
caattggcatccttactttatctggagccagatagcgacctcatggcaatctcagttgca
gctgaagcaaaacgagaagaggaaaaagaaaaaggggtcactcctgacagtgggggtgaa
aaccctgacattgtcccatttgaggacaatgaagaagaggaggaggaagaaagtgaagag
gaggtggaagcctttgggcatcctcttggagcagcagctcaaggcagagggagaggtaga
ggaatcatgtggcctcctcacattccaattgcccgtggggcaagacccatccacggcatg
agagcttttcctcccatgatgatgggtgctgatggtttttcatacggagctgttacacct
gatagcttcggaatgccagatctctttggtgtggctccccgtggatttgcctcatatggt
ccgaggttttctggtgattttactggtgctacatctggcatgatgtttcctgggcggcct
tcccagccaggagctatgtttccagctggtggatttgggatgatgatgggtgcaggacgt
gctccatttatggggggaatgggtcccactgcatcaaatcctcttcgagggcttcggcca
ggtggcatgtttgccccacttctcgcatcatcctcccagaacaataaccggtcttttaag
agagatcagagagcagcacctagtgatcgaattgacagacataatatagaatcagatctg
gttaggggtgcagctggggaatcaaatgatgagacaagatacccgcaggaaacatacaag
gtttcccatgaagatcaatttggtgctgtaaatagcaatagaaacaatgagagtggaagt
gaggatgaggcacctagacggtcaaggcacggggagggaaagaagaagcagcgaggttca
gaaggagatgctaatcctggctcggatcacaaacagtaa
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integrated database retrieval system
