KEGG   Populus euphratica (Euphrates poplar): 105117482
Entry
105117482         CDS       T05872                                 
Name
(RefSeq) pre-mRNA-processing factor 19-like
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
peu  Populus euphratica (Euphrates poplar)
Pathway
peu03040  Spliceosome
peu04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:peu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    105117482
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    105117482
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:peu03041]
    105117482
   04121 Ubiquitin system [BR:peu04121]
    105117482
   03400 DNA repair and recombination proteins [BR:peu03400]
    105117482
Enzymes [BR:peu01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     105117482
Spliceosome [BR:peu03041]
 Complex B
  Other components
   Prp19 complex
    105117482
 Complex C
   Prp19-CDC5 complex
    105117482
Ubiquitin system [BR:peu04121]
 Ubiquitin ligases (E3)
  U-box type E3
   105117482
DNA repair and recombination proteins [BR:peu03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    105117482
SSDB
Motif
Pfam: WD40_Prp19 Beta-prop_WDR5 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40 WD40_WDHD1_1st WD40_Gbeta Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd WD40_CDC20-Fz Beta-prop_EML_2 EIF3I WD40_MABP1-WDR62_2nd Prp19 WDR55 Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_EML WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st WDR90_beta-prop_4th ANAPC4_WD40 NBCH_WD40 Beta-prop_SCAP Beta-prop_IFT122_1st Beta-prop_Vps41 Beta-prop_EIPR1 Beta-prop_Aladin Beta-prop_WDR75_1st Beta-prop_WDR19_1st Beta-prop_WDR41 U-box Beta-prop_DCAF12 Beta-prop_SPT8 Beta-prop_HPS5 Beta-prop_DCAF4 WD40_like Beta-prop_VPS8 KNTC1_N zf-Nse WDR54 B-prop_COPA_B_2nd
Other DBs
NCBI-GeneID: 105117482
NCBI-ProteinID: XP_011013445
UniProt: A0AAJ6TLK5
LinkDB
Position
Unknown
AA seq 432 aa
MHCSISGEVPGEPVVSKRSGLLYEKRLIERHVSEYGKCPITGEPLTMDDVVPVETGKIVK
PRTVQTASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQVIDSSLDASAKDD
DLGQPGKRVRPGISASIITELTDCNAALSQQRKKRQVPPTLAPIDALERYTQLSSHPLHR
TSKPGILSIDIQYSKDIIATGGCDATAVIFDRPSGQIASALSGHSKKVTSVKFVAEGEFF
LTGSADKTVRVWQGSEDGNYDCRHILKDHTAEVQAVTVHSTNNYFVTASLDNTWCFYDLS
SGLCLTQVADTSKTDGYTSAAFHPDGLILGTGTSEAVVKIWDVKSQANVAKFEGHVGPVT
AISFSENGYFLATAAHDSVKLWDLRKLKNFRTLNLYDSDTPTNSVEFDHSGSYLGISGSD
IRFNLQISSHFQ
NT seq 1299 nt   +upstreamnt  +downstreamnt
atgcattgctcaatttccggcgaggttccgggagagcccgtcgtctcgaagaggtctggg
cttttatacgagaaacgcttaatcgagagacacgtatcggaatatggaaaatgccccatt
actggggaaccgcttaccatggatgatgttgttccagtcgaaacaggaaaaattgtgaag
ccgagaactgtacagaccgcaagcatccctgggatgcttggaatgtttcagaatgaatgg
gatggcctaatgttgtccaactttgcattggagcaacaattacatacagcaaggcaagag
ctaagtcatgcattataccaggtaattgactcatcattagatgcttctgccaaggatgat
gatttgggccaacctgggaagagagtacgacctggaatttctgctagcatcattactgag
cttacagattgtaatgcagctctttcgcaacagcggaaaaagcggcaggttcctccaaca
ttggctcctattgatgccctagagaggtacactcaactttctagccatccacttcacaga
actagcaagccaggcatcttatctatcgatatacaatattcgaaggatatcattgctact
ggcgggtgtgatgcaactgctgtcatctttgatcggccttcagggcagattgcatctgca
ctcagtggtcactcaaagaaggtaacaagtgtgaaatttgtggctgagggtgaatttttc
ttaactggatcagcagataagacagttcgagtgtggcaaggatctgaagatgggaactat
gattgcagacacatcctgaaggatcatactgcagaggttcaagctgtcactgttcattcc
acgaataattacttcgtgactgcttctcttgacaatacatggtgcttctatgatctctcc
tctggtttatgcttgactcaggttgctgacacgtccaaaactgatggctatacatctgct
gcctttcatcctgatggtctcatccttggaacaggcacttcagaagcagttgttaaaatt
tgggatgtaaaaagtcaggcaaatgttgcaaaatttgaaggccatgttggaccagtgaca
gcaatatctttctctgaaaatggatactttctggctactgctgcccatgatagtgttaag
ctgtgggatctgaggaaattgaaaaacttccggacgctcaatctctatgattctgacaca
cctacaaactctgtggagttcgaccacagtggatcttaccttggaatttcaggatcagat
ataaggttcaatctccaaatatctagtcattttcaatag

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