Populus euphratica (Euphrates poplar): 105117797
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Entry
105117797 CDS
T05872
Name
(RefSeq) probable NOT transcription complex subunit VIP2
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
peu
Populus euphratica (Euphrates poplar)
Pathway
peu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
peu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105117797
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
peu03019
]
105117797
Messenger RNA biogenesis [BR:
peu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105117797
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105117797
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
105117797
NCBI-ProteinID:
XP_011013859
UniProt:
A0AAJ6XCX1
LinkDB
All DBs
Position
Unknown
AA seq
664 aa
AA seq
DB search
MSALLNSGLNGSASNLPDTTARSFGTSFSGQSGAAASPVFHHSGGTIQGLHNIHGSFNVP
NMPGTFASRNSTINNIPSGGVQQPTGSLSSGRFASNNLPVGLSQMSHGSSHGHSGVTNRG
GLSVVGNPGYGGSTNGIGGSIPGILPTSAGIGNRNGVPGLGVSQILGNTGPRITSSGGNM
VGGGNIGRSLSSGGGLSVPGLASRMNLTANSGSGSLGMQGQNRLMTGVLPQGNPQVIPML
GNSYPNAIGPLSQSHVQGVNNLSSMGMLNDVISNDSSPFDINNDFPQLTSRPSSAGGPQG
QLGSLRKPGLGVSPIVQQSQEFSIQNEDFPALPGFKGGNADYTMDLHQKEQLHDNTLSMM
QSQHFSIGRSAGFNLGEAYSSYRPQQQQQHAPAVSSSVSFASVNNQDLHGSELFPSSHSA
YHPQTSGPPGIGLRPLNSPNTVSGVGSYDQLIQQYQHQNQPQFRLQQMSTVNQPFRDQGI
KSMQTAQSAPDPFGLLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSAESLHKTFGSPWS
DEPAKGDPEFIVPKCYYAKPPPPLDHNYFSKLWTETLLYAFYSMPKDEAQLHAANILYER
GWLYHKEQRRWLKRVPNTEPLVKTSTYERGSYHCFEPNTFEITLKENFVLHYEMVEKRPG
LPQH
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcgttacttaattctggtctaaatggatcagcttcaaatcttccggacaccacg
gcgcgatcttttggtacatccttctctggccagtccggtgcggcagcctctcccgttttt
catcacagtggtggaactattcaagggctgcataatattcatgggagctttaatgtaccc
aacatgcctggaacttttgcttcaagaaactctacaatcaacaacattccttcaggtggg
gttcaacaacctactggaagcctctccagtggacggtttgcgtcgaacaatcttccagtt
ggtctctctcagatgtctcatggcagttcccatggacattctggggttacaaatagagga
ggtttaagtgttgtaggaaatccaggatatggtggcagcaccaatggaattggtggttct
atacctggtattctcccaacctctgctggaataggtaaccggaatggtgttcctggattg
ggggtttcccaaattttgggcaatacaggtcctaggattacgagttctggaggaaacatg
gttggtggtgggaacattgggagaagcttaagctcgggtggaggactatctgtccctggt
cttgcatctcgtatgaatttaactgcaaatagcggatctggcagcttaggcatgcaagga
caaaatagattaatgactggtgtgcttccacaaggaaatccacaggtgattcctatgtta
ggaaactcctaccccaatgccataggtcctctttcccaaagccatgttcaaggtgtgaac
aatctcagctctatgggaatgttgaatgatgtgatctccaatgacagttcccctttcgac
attaacaatgatttccctcagttgacaagtcgtcctagttctgctggagggcctcaaggt
caattgggttcactacgaaaacctggtcttggagttagtcctattgttcaacaaagccaa
gagttcagcattcagaatgaagattttccagctttaccaggatttaaaggtggtaatgct
gattacaccatggatttgcatcagaaagaacaactgcacgacaataccttgtcaatgatg
caatctcagcacttctctatagggagatctgctgggttcaacttaggagaggcttattca
tcctatcgtcctcagcaacaacagcaacatgccccagctgtcagtagtagcgtctctttt
gcatctgtaaacaatcaagatcttcatggttcagaactatttccgtcttcacattcagcc
tatcacccacagaccagtggaccaccgggaattgggctgagacctttaaattctccgaat
acggtatctggtgttggatcatacgaccagctcatccagcagtatcaacaccagaaccag
ccccagtttcgactacaacaaatgtcgactgtcaatcaaccatttagagatcagggcata
aagtccatgcagacagcacaatccgcacctgatccatttgggttacttggcttgttaagc
gttataaggatgagtgatcctgatctgacctccttggcacttggaattgatttaacaact
cttggattgaatttgaattcagctgagagtcttcacaagacttttggctccccatggtct
gacgagccagcaaagggtgatccagagttcattgttccaaagtgttattatgctaagcca
ccacctccactggatcataattacttttcaaagctctggacagaaacgttgctctatgcc
ttttacagcatgccaaaagatgaagctcaattacatgccgcaaacatactttatgaaaga
ggctggttataccacaaggagcagcggcgctggttaaaaagagtccccaacacagagcca
cttgttaaaacgagcacatatgagagaggttcttaccattgttttgaaccaaacacattt
gagataacgctcaaggaaaatttcgttctccattatgagatggtggaaaagagaccgggg
ctgccgcaacattaa
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