Populus euphratica (Euphrates poplar): 105117965
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Entry
105117965 CDS
T05872
Name
(RefSeq) protein PAT1 homolog 1-like isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
peu
Populus euphratica (Euphrates poplar)
Pathway
peu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
peu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105117965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
peu03019
]
105117965
Messenger RNA biogenesis [BR:
peu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105117965
mRNA degradation factors
5'-3' decay
Decapping complex
105117965
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
105117965
NCBI-ProteinID:
XP_011014090
UniProt:
A0AAJ6XD20
LinkDB
All DBs
Position
Unknown
AA seq
797 aa
AA seq
DB search
MMMDGGNIEQAPKIGDNSTEGAVFDASQYAFFGKDHVEEVELGGLEDDEELPAADFEEEE
FLFDRQEGEVLRSLSDIDDLAITFSKLNKGVNGPRSTGIIGDRGSRESSSAAEWAQGEDF
PNWSDQQLLDQDGVEDGTRWSSQPYSSTARLAESKHLYRTSSYPEQQQQHHHHHQHYSSE
PILVPKSSYTSNPPLGGQSPQSSPNCSHLNIQYLAGGHQIALPPFSNSHLPLSSLHHGSP
HYGGNLPQFSSGLPANSRPPSQWVNHAGLYPGDHPNRLTNMLQPPLSHQNGIMPPQLIPQ
LQPQQHRLHPPVHSSSGHLLGMQSQVFNPHLSLSPPMTNNFDTMLGLTNRDQRPKSVQKV
RSMVPYPQQGFDVNGQKFDIGLPQFRSKYMTTDEIETILRMQLAATQSNDPYVDDYYHQA
CLSKKTAGAKLRHHFCPIHLRDLPPRARANAEPHAFLQVDALGRIPFSSIRRPRPLLEVE
PPNSTGGGNTEQNAAEKPLEQEPMLAARVTIEDGLCLLLDVDDIDRFLEFNQFHEVGTQL
RRRRQALLEGLAASMQLVDPLGKNGHTVGLAPKDDFVFLRLVSLPKGRKLLARYLQLIFL
GGNLMRIVCMAIFRHLRFLFGGLLFDNGVAETTNELARAVSSCVRRMDLCSLSACLAAVV
CSSEQPPLRPLGSSAGNGASLILLSVLERATELLNDLHDSSDYNVTNGALWKASFDEFFS
LLIKYCINKYDGIMQSSLSDSDPAESIKRELPMELLRAIVPLTNDYQKKLLYDLSQRSLV
GQDDGNGGDINSEVVPS
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atgatgatggatgggggtaatattgaacaagctcccaagattggagataactccacagaa
ggtgctgtatttgatgcatctcaatatgcattctttggtaaagatcatgttgaggaagtt
gagttaggtgggttggaggatgacgaggagttgcctgctgctgattttgaagaggaagag
tttctctttgatagacaagagggtgaggttttacgatctctatctgacattgatgatctt
gcaattacattttcaaagttgaacaagggtgtcaatggaccgagaagcactgggataatt
ggtgataggggctccagagaaagttcatctgctgctgaatgggcacagggagaggatttt
ccaaattggtctgaccagcagctacttgaccaagatggcgttgaagatggcacaagatgg
tcgtcgcagccatattcttctactgctcgccttgcagaatcaaagcatctataccgaact
tcttcataccctgagcagcagcagcagcaccaccaccaccaccaacactactctagtgaa
cctattcttgtgccaaaatcttcttacacttcaaatcctcccctgggcggccaatctcca
cagtcctcaccgaactgcagtcatctaaatattcaatatcttgctggtggccaccaaata
gcattaccccccttctctaattcccatcttccattgagcagcttacatcatggatcacca
cattacggtgggaatttgcctcaattcagttctggtcttcctgctaatagccggccacct
agccaatgggtcaaccatgcaggcttatatcctggagatcatcccaaccgcttgaccaat
atgttgcaaccgccattatctcatcagaatgggatcatgcctccacagttgatcccacaa
cttcagccacaacagcataggttgcaccccccagttcattcatcatcgggccatttattg
ggcatgcaatctcaagtgttcaatcctcatctctctttatcccctccaatgacgaacaac
tttgacacaatgcttggtctgaccaatagagatcaaagaccaaaatcagttcagaaagtt
agatcaatggtgccttatcctcagcaaggctttgatgtcaatggtcagaagtttgatatt
ggcttgcctcagttcagatccaagtatatgactactgatgaaattgaaactattctcaga
atgcagctagctgcaacacagagtaatgacccatacgtggatgattattatcaccaggct
tgcctttcaaaaaaaacagctggggcaaagctcagacatcatttctgcccaattcacttg
agggatcttcctccccgagcacgagctaatgctgagccgcatgcttttctccaggtcgat
gctcttgggagaattccgttctcttcgattcgcaggcctcgtcctcttcttgaagttgaa
cctccaaattctactggtggtggtaatactgagcagaatgctgctgagaagcccctagaa
caggagccaatgcttgcagctagagtcacaattgaagatggtctttgccttcttcttgat
gtagatgatattgatcgttttctagaattcaatcagttccatgaggttggaacccagttg
agacgcaggaggcaggccttgttggaagggctggcagcttccatgcaattggttgaccct
ctcggcaagaatggccacacagttggacttgctcccaaggatgattttgtgttcttgcgt
ttagtatctcttcccaagggacggaagctccttgcaaggtaccttcaacttatttttctg
ggtggcaatctcatgcggattgtctgcatggccatttttcgtcatttaaggtttttgttt
ggaggtctcctgtttgataatggagttgcagaaaccacaaatgaacttgcaagggctgta
tcatcatgtgttcgtcgcatggatctttgttccctcagtgcctgtcttgctgcagtggtt
tgctcctcagagcagccgccccttcgcccccttggaagctcagctggaaatggggcttcc
ctcatattattgtctgtgttggagagagcaactgaactgttaaatgatcttcatgattct
agcgactacaatgtgactaatggggcactttggaaggcctcatttgatgagttttttagc
ctgcttattaaatattgcataaataaatacgatggtattatgcagtcttctctgtcagat
tcagatccagctgaatctattaagagggaactacctatggagctcttgcgtgcaattgtt
cccctcactaatgactaccagaaaaagctgttatatgatctttcccagcgttccttagtt
ggtcaggatgatggtaatggtggtgacatcaattctgaagtggtaccaagttaa
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