Populus euphratica (Euphrates poplar): 105120772
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Entry
105120772 CDS
T05872
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
peu
Populus euphratica (Euphrates poplar)
Pathway
peu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
peu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105120772
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
peu03019
]
105120772
Messenger RNA biogenesis [BR:
peu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105120772
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105120772
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
DNA_pol3_a_NII
Motif
Other DBs
NCBI-GeneID:
105120772
NCBI-ProteinID:
XP_011017445
UniProt:
A0AAJ6TTX3
LinkDB
All DBs
Position
Unknown
AA seq
2398 aa
AA seq
DB search
MIELSSTVPSQIRFLLQSLNEANVDSVFRDLCQFMEYELEGSILTLQTCLDYLKTDLKNL
HLEPVLASVFKFVLDKPNFATVFCQSLKSTEITEDFLEKLSNLLKLSVAEKIGTGLALSE
SENADTRTFAKKFCLAKIEELCANPVPMNSVEQIQNIVMFLQRSEGLSKHVDNFMQMLSL
MQSKDVVPFVLTPLISDELREANFLRNMDLFHGSTDSEFDAILAEMEEEMSLGDIVKELG
YGCTFDVLHCKEILSPFLPLTEVTISKILGTIARNLTGLEDNQSTFSTFGLALGFNITTD
LPQLSSWDIDVLVKTIKQLAPGTNWIQVIENLDHEGFYIPNEEAFSFLMSVYRQTCQDPF
PLHAIYGSLWKNTEGQLSFLKHAVLAPPEVFTFAHSGRQLNYIDALHGHKLQAGHSNHAW
VCLDLLDMLCQLAERGHASSVRSMLEYPLKHCPELLLLGMSHINTAYSLLQYEVSFMVFP
LIIRSAAGSGMMLYLWHLNPNLVLRGFVDAHNVEPNIMTEILDACQELKILSSVLDMIPF
PSGIRLAALASRKELIDLEKWLGNNLITYKDSFFEECLKFLKEIQPGGSQDFSAKPIHSQ
STIVNLYSETGSSFLKVLKAHSSLVISTQLSEEMERLHVTVMDSNPRLQNGSSADSSTPE
GFSDDVEAEANSYFHQMFSGHLTIDSMVQMLARFKESPVKREQLIFECMIGNLFEEYRFF
PKYPERQLKIAALLFGSVIKHQLVTHLTLGIALRGVLDALRKPPDSKMFVFGTKALEKFV
DRLIEWPQYCNHILQISHLRGTHAELVAFIERALARISSGHLESDGINNASAAHHHGLYQ
AASVNGESNSINIQQAGQQLSSTLHLQQRHESSLDDRLKASAVPFNETKQFASAAPFNES
KQFLSSSVQSSVAPSSDVSSIQKGTVTSSALLSSPGSVRPFRAVTSTRFGSALNIETLMA
AAERRETPIEAPASEIHDKVSFMINNISVANVEPKAKEFTEILKEQYYPWFAQYMVMKRA
SIEPNFHDLYLKFLDKVNSKALNKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWL
GKLTIGRNQVLRAREIDPKSLIMEAYEKGLMIAVIPFTSKVLEPCQNSLAYQPPNPWTIG
ILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDIAPTSLLKDRKREIEGNPDFSNKDV
GASQPQMLPEVKSGIISPLNHVELPLEVASPPNSGVHTHMLSQYTSPVHLSSGTLMEDEK
LAALGLSDQLPSAQGLFQATPSQSTFPASQLPTAIPNIGTHVIINQKLNSWGLHVHFQRL
VPAVMDRAIKDIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSL
AHVTCKEPLRSSISSQLRNSVQGFSLTSEILEHAVQLVTNDNLDLGCAVIEQAATDKAIQ
TIDTEIAQQLLRRKHRDGVGPAFFDANMYTQSSMGVVPEALRPKPGHLTLSQQRVYEDFV
RLPWQNQSSQSSNVIPTGSPSSGATGLASAYGSVSLDVASEAIESNSAALLSAASIHSVT
ADGVIQQSSENNSTSASIPATTSSEPSPVESSDVVKEAGVSSQPSSSPVASERVGSSIAD
ASLNTRDALDKYQIIAQKLETLVTSDSREAEIQGVVAEVPEIISRCVSRDEAALAVAQKV
FKGLYENASNSFHVNACLAILAAIRDVCKLVVKELTSWVIYSDEERKFNKDITLGLMHSE
LLNLAEYNVHMAKLIDGGRNKVAMDFAVSLIQALIVEESSVISELHNLVDALAKLAAKPG
SSESLQQLIEIARNPGVNAAALTSPALGKEDKTRQSRDKPSNQLIASREEYSNIEPVEPD
GFHEQVSMLFAEWYRICELPGANDTASTHYILQLHKNGLLKGDEVTDRFFRALMELSVAH
CLSSEVINSSVLQSPHQMQNLSFLAIDIYAKLVIAILKVEQGSSKLFPLSKILSITVKFI
QKDSEEKKNSFNARPYFRLFISWLQDLLSPEPVVDGVNFQILTAFAGAFHSLQPLKVPGF
SYVWLSLVSHRSFMPRLLIGNAQKGWPYVQRLLVDLFQFLEPYLRNAELAVPVHLLYKGT
LRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPLNMRLPDPSTPNLKIDLL
PEIREPPHILSEVDAALKVKQMKADVDEYLKTRQQGSSFLTELKQRLLLSPSEAASAGTR
YNVPLINSLVLYAGMQAIQQLQARTSHGQSAGNTVPLAVFLVDAALDIYQTLILDLDTEG
RYLFLNAVANQLRYPNNHTHYFSFVLLYLFAESNQEIIQEQIARVLLERLIVTRPHPWGL
LITFIELIKNPRYNFWNRSFIRCAPEIEKLFESVARSCGGLKPMDDSMVSGWVSESAH
NT seq
7197 nt
NT seq
+upstream
nt +downstream
nt
atgattgagttatcttcaacagtaccgagtcagattcggttcctccttcaatccttgaac
gaagctaacgttgattccgtctttcgtgacctctgtcagtttatggagtatgaacttgaa
ggaagtattttgacgctccaaacatgtttggattatttgaagactgacttgaaaaacttg
catttggaacctgtacttgcatcggttttcaagtttgttttggacaaacccaattttgct
accgtgttttgtcagtctttgaaaagcacggagatcactgaagatttcttagagaagttg
tccaatttattgaaattatctgtggctgagaaaattggcactggtctcgcgctctctgaa
tcagagaatgctgataccaggacgttcgccaagaagttctgtttggctaaaattgaggaa
ttgtgtgcaaatcctgttccaatgaactctgttgagcaaattcagaatattgttatgttc
ctccagcggtctgaggggctttccaagcatgttgataactttatgcagatgttgtcgtta
atgcagtccaaagatgttgtcccatttgttttaactccgttgatttctgatgaattgcgc
gaggccaattttttgaggaatatggatctcttccatggaagtacagatagtgaatttgat
gctattttagctgaaatggaggaggagatgagcctgggagatattgtgaaagagttaggc
tatgggtgcacatttgatgtgttgcactgcaaagaaatattatccccttttcttccactg
acagaagttaccatttctaagatacttggaacaattgcccgaaaccttaccggtcttgag
gacaaccagagcacattttcaacgtttggcttggctcttggttttaacattacaactgat
cttccacagttaagctcctgggacattgatgtccttgtaaagactatcaagcaacttgct
cctggtactaactggattcaagttattgaaaacctggatcatgaaggattttacatacct
aatgaggaggcattttcctttctgatgtctgtatatagacagacatgccaggatccgttc
cctctccatgccatctatgggtctctttggaagaatactgaaggtcagctatcttttctg
aaacatgcagtactggcaccgccagaagtgtttacctttgcccattctggaaggcagctg
aactatattgatgctttgcatggccataagcttcaagctgggcattctaatcatgcgtgg
gtgtgccttgaccttttggatatgctttgtcaactggctgagaggggtcatgctagttct
gttcgatcaatgcttgagtatcctctcaagcactgtccagaattgttgcttcttgggatg
tcacatatcaatactgcctacagcctcctccaatatgaagtgtcttttatggttttccct
cttataatcagaagtgctgctggtagtggtatgatgctttacctctggcatctgaaccct
aatcttgtgttgcggggatttgtagatgctcacaatgttgaaccaaacatcatgactgag
atattggatgcttgtcaagagctaaagattttgtcatcagtattagacatgattcccttt
ccttctggtattagattagcagcccttgcttcaagaaaagagcttatagaccttgaaaag
tggctgggtaataatttaattacatacaaggattcattcttcgaggaatgtctcaagttt
cttaaggagattcagcctggtggatcacaggatttttctgccaaacctattcattcgcaa
agtaccattgtgaatctttattcagagactggttcatccttcctgaaggtccttaaagcc
catagcagtttagttatatctacccaactttctgaggaaatggaaaggttgcatgtaaca
gttatggactctaatccaaggctgcagaatggtagctcggcagattcatctacccctgag
gggttttcagatgatgttgaggcagaggcaaactcttatttccatcaaatgttttctggt
catctgacaatagattccatggttcaaatgcttgctcgattcaaggaatctcctgtgaaa
agggaacaattgatttttgagtgcatgattggcaatctatttgaagaatatagattcttc
cctaagtatccagaaaggcaactaaaaattgctgctcttctttttggttctgttatcaag
caccagcttgtaactcatctcactcttgggattgccttgcgtggtgttttagacgcactt
cggaaacctccagattccaaaatgtttgtgtttgggaccaaggctttggagaagtttgtg
gatcgtttgattgaatggccacagtattgcaatcacatcttacaaatatctcatctgcgt
ggcactcatgctgagcttgttgctttcattgaacgagcacttgccaggatttcgtcaggg
catttggaatcagatggaattaacaatgcttctgctgctcatcaccatggtttgtatcag
gctgcctcagtaaatggagagtcaaatagcattaatattcaacaggctgggcagcagctt
tcctctacactccatcttcaacagagacatgaaagttctcttgatgaccgtttaaaagca
tctgctgttccatttaatgagactaaacaatttgcatctgcggctccatttaatgagagt
aaacaatttctatcttccagtgtgcaatcttcagttgccccctcaagtgatgtttctagc
attcagaagggtacagttacttcttcggctttgttgtcttctcctggttctgtccgtcct
ttccgagcagttacctccaccaggtttggctctgcattgaacatcgaaacacttatggct
gctgctgagagaagagaaacaccaatagaggctccagcatcagagattcatgacaaagta
tcattcatgattaataatatttcagttgcaaatgttgaacctaaagcaaaagaatttact
gaaatactaaaggagcagtactatccctggtttgcgcagtacatggtcatgaaaagagca
agcattgagcccaattttcatgatttgtacttgaagttccttgataaagttaattcaaaa
gctttaaataaggagattgtccaagccacctatgaaaactgcaaggttcttttgggatca
gagcttataaaatctagttcagaagagcgttcattgcttaaaaatttgggaagctggctt
gggaaattaactattggaaggaaccaagttctgagggcacgtgagatagatcccaaatct
ttgatcatggaggcatatgagaagggattgatgattgcagttataccatttacatccaag
gttctagagccatgccaaaacagtctagcataccaacctcctaatccttggactattggc
attcttggattgctggctgagatctactcaatgccgaacttgaaaatgaacctcaaattt
gatatagaggtattgttcaagaaccttggtgtagatatgaaggacatagcaccgacttct
cttcttaaggaccggaaaagggaaatcgaagggaatcctgatttttccaataaagatgta
ggagcatcccaaccgcagatgcttccagaagttaaatctggaattatatctcccctaaat
catgttgagctaccacttgaggttgcaagcccacctaattctggcgttcatactcatatg
ttatctcagtacacctctcccgtccatctttcttcgggtacattgatggaggatgaaaaa
ctagctgcattaggcttgtctgatcagctcccttctgcacaaggactattccaagctact
ccatcccagtcaacatttccagccagtcagcttcccacagcaatacctaacatcggaact
catgttattatcaatcagaagttaaattcttggggcttacatgtgcattttcaaagactg
gttcctgctgtaatggacagagccatcaaagatattgtgtctggtattgttcagagaagt
gtttctattgcaacacagacaacaaaagagcttgttttgaaggattatgccatggaatcc
gatgaaacacgaatatataatgcagcgcacttaatggttgccagtttggctggaagctta
gctcatgtaacatgcaaggagccattacgtagttcaatatcaagtcagctaaggaattca
gttcagggtttctccttaacaagtgaaattctggagcatgctgtgcaacttgttactaat
gataaccttgatcttgggtgtgcggtgatcgaacaggctgctactgataaggccatacaa
accattgacacggaaatagctcaacaacttctaagaaggaagcatagagatggtgttggt
ccagcattttttgatgcaaacatgtacacccaaagttctatgggcgttgtacctgaggcc
cttcgccccaagcctggtcacttgactctctctcaacagcgagtttatgaggattttgtt
cggcttccgtggcaaaaccaatctagccagagctcaaatgtcattcctacgggttctcct
tcttctggtgctactggtcttgctagtgcatacggttcagtttcattggatgtggcttca
gaagctattgaatctaattcagctgcacttcttagtgctgcttcaattcatagtgtgaca
gctgatggtgttatccaacaaagttctgaaaacaattccaccagtgcttcgattcctgct
accacttcctctgaacctagtccagtggaatcctcagatgttgtaaaggaagcgggagtt
tcttcccaaccgtcatcttcaccagttgcttctgagcgtgttgggagtagcattgcagat
gcttcattgaacactagggatgcattggacaagtaccagattattgcgcagaagttggag
actttggtgactagtgattctagagaagctgaaatccagggggtagttgcagaggttcct
gaaatcataagtagatgtgtcagtcgagatgaggctgccttggctgtagcacaaaaggtt
ttcaagggtttatatgagaatgcatcaaacagttttcacgttaatgcctgccttgctatt
ctggctgctattcgtgatgtgtgcaagcttgtggttaaagaactcactagctgggtgatt
tactcagatgaggagcgaaagttcaataaagatattacccttggcctgatgcatagtgaa
ttgctcaaccttgcagagtacaatgttcatatggcaaaactcattgatgggggaaggaat
aaggtggcaatggacttcgctgtttccctcatccaagctttgattgttgaagaatccagt
gtcatctctgaactccacaatcttgtcgatgctctggccaagcttgctgcaaaacctgga
tcatctgagtcattacaacagcttattgagattgctaggaatcctggtgtcaatgcagct
gctctaactagtccagctcttggaaaggaggacaagacaagacagtctagagacaaacct
tccaatcagttgatagctagcagggaagaatatagcaacattgaacctgtggaaccagat
ggttttcatgagcaggtttccatgctttttgcggaatggtatcggatatgtgaacttcct
ggtgcaaatgacacagcttctacccattacatcttacagctgcataaaaatggattgctg
aagggggacgaggtgacagatcgcttttttcgcgcactcatggagctctctgttgcgcac
tgcttgtcctctgaggtgatcaattccagtgtactgcaatcacctcatcaaatgcagaat
ctctccttccttgctattgatatctatgcaaaattggtcattgcaatcctaaaggtggag
cagggatcaagcaaactctttcctttgtcaaagatcttgtccatcactgtgaaattcata
caaaaggattcagaggagaagaaaaattcttttaatgcaagaccatatttcagattgttt
ataagttggcttcaagatctcctttccccggagcctgttgtcgatggtgtaaactttcag
atcttgacagcctttgctggtgcattccacagtctgcagccccttaaagttcctggtttc
agctatgtatggctctcattggtgagtcataggagtttcatgccaagattactcatagga
aatgcacagaagggctggccctatgttcagcggttgctggtagacttgttccagttcctg
gagccctatttgaggaatgccgagctggcagtgccagttcacttgctatataaaggtaca
cttagggtgcttttggtgctgctacatgatttccctgagttcctttgtgattaccatttc
actttctgtgatgtgattcctccaagctgcatacaaatgcgtaatattattctcagtgct
ttccccctcaatatgaggcttccagatccatcaactcccaacttaaagattgatttgctt
ccggaaattagggaacctcctcacattctctctgaggttgatgcagctcttaaagtaaag
cagatgaaagctgatgtagatgagtatctcaagactaggcaacagggttcttctttcctg
actgaattgaagcagagattgctcctttcacctagtgaagctgcatctgccggaacccgt
tataatgtaccgttgatcaactcccttgtcctttatgctggaatgcaggccatccagcag
ctgcaggcaagaacatcccatggacaatcggcaggaaatactgttcctttagctgtattt
ttggtggatgctgctttagatatctaccagacgcttatactggacctagacacagagggc
cgatacctctttctaaatgctgttgctaatcaactgcgctatccgaataaccacacgcat
tacttctcctttgttctgctttacttatttgctgaatcaaaccaggaaattatccaagag
cagattgcaagagttcttttggaacgtctaattgttactcgcccacatccgtggggcctt
ctgattactttcatcgagctcatcaagaatcctagatacaacttttggaatcgatcattc
ataaggtgcgcgccggagatagagaaactatttgagtcagttgctagatcatgcgggggc
ttgaagcccatggatgacagcatggtctctggttgggtttctgagagcgcacattga
DBGET
integrated database retrieval system
