Populus euphratica (Euphrates poplar): 105121627
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Entry
105121627 CDS
T05872
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
peu
Populus euphratica (Euphrates poplar)
Pathway
peu03013
Nucleocytoplasmic transport
peu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
peu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105121627
03015 mRNA surveillance pathway
105121627
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
peu03019
]
105121627
Enzymes [BR:
peu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
105121627
5.6.2.5 RNA 5'-3' helicase
105121627
Messenger RNA biogenesis [BR:
peu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
105121627
mRNA cycle factors
Common to processing body (P body) and stress granule
105121627
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
NAT10_TcmA_helicase
NPHP3_N
nSTAND3
ATPase
PhoH
SRP54
AAA_16
AAA_22
AAA_25
Ribosomal_S13_N
AAA_32
AAA
Motif
Other DBs
NCBI-GeneID:
105121627
NCBI-ProteinID:
XP_011018658
UniProt:
A0AAJ6TWJ3
LinkDB
All DBs
Position
Unknown
AA seq
1266 aa
AA seq
DB search
MDAQDNSLYETASQPDTATDAYTFLEFNTQGESDFDYPEFRSPVNWPTPSDSLAAASSSV
DPTSSDHRAAASNSDHHSDSPAASKSAARGGANSGTQGVVEGLVASMGGLNFEETGDDDG
YDFGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEV
CLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLNVNALKDMNWDLSQ
WCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDATLEDLEKPGVDDE
PQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKRVAYFVFP
KEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDMSHGF
SVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVENQTVRSALPRRFGAPGLP
ELNASQVLAVKNVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQ
LAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGEL
SSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECL
IPLVLGAKQVVFVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPS
LSEFPSNSFYEGTLQNGVTVNERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNR
TEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVD
SFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNS
LLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFFGGGPGIVPNDNFGSVASASP
NADRRNSRARGSYMPPAPPNGTHKPGAHPAGFPMPRVPIPPFHGDPPSQPYAIPTRGAVH
GPIGAVPQVPQPGSRGFGAGRGNAGAPIGSHLPHQQGTQQGNGNIGSFNFSSLENPNSQP
SVGSALSQPGYINNIPVQGSSQTFRDGFSMGGMSQEFLGDDFKSQGSHVPYNVADFSTQA
SQSGYAVDYVTQGAQGGFPGNFLNQNSQARFSRFGSGNDFMSQDYMAHGSQGLFTQVGFN
DPSQDDASQSHFGITTPNQLQSQGLMNSLYSQPFAHYNTQPVNLQAPQQQSQQGQGTQNQ
KIHYNG
NT seq
3801 nt
NT seq
+upstream
nt +downstream
nt
atggatgcccaagacaacagcctatacgaaacagcgtcgcagccagacacagcaacagac
gcctacaccttccttgaattcaacacacaaggcgaatccgattttgactaccccgaattc
cgctctccggtgaactggcccactccttcagactcgcttgccgccgcatcctcctccgta
gaccctacctcatccgaccaccgtgccgccgcttccaattccgatcaccactctgattca
cctgctgcgtcaaaatctgctgcgcggggaggagcgaatagtgggacccagggggtggtg
gaggggttagtggcgagtatgggagggttgaattttgaagagacgggagatgatgatggg
tatgattttgggaaaggagattttacggagcacgcgtgtaggtactgtggggtttcgaat
cctgcgtgtgtagtaaggtgtaatgtgccgtcctgtagaaagtggttttgtaattcgaga
gggaatacctctggttcgcatattgttaatcatctggttcgagcaaagcataaagaggtc
tgtctccataaagacagccctctgggagaaacaattcttgagtgctacaactgtggttgc
cgaaatgtgtttcttcttggatttatatcggccaagacagagagtgttgttgtcctcctc
tgcagggagccgtgcttgaatgttaatgcactgaaggacatgaactgggacctgagccag
tggtgccctctaattgatgataggtgttttctacagtggcttgtgaagatcccatctgaa
caggagcagttgagggcacgccaaattagtgctcaacaaataaataaagtggaagaactt
tggaaaacaaatcctgatgccactcttgaagatcttgagaagcctggtgttgatgatgaa
cctcagcctgtagcattgaagtatgaagatgcatatcagtatcaaaatgtatttgctcca
cttattaagcttgaagctgactatgataaaatgatgaaagagtctcaaagcaaggataat
gtcactattcgatgggatattggccttaacaagaagcgtgttgcatattttgtatttcca
aaggaggacaatgagttgcgccttgtacctggtgatgagttgcgactgcgctattctgga
gatgcagctcatccagcatggcaatcagttgggcacgtgatcaagctaactgcacaagag
gaggttgcactcgagcttcgcgctagtcagggagttcctgttgatatgagccatggtttt
agtgttgattttgtttggaagagcacgagctttgatcggatgcagggagcaatgaagact
tttgcagtggatgaaaccagtgtcagtgggtatatataccatcacttgttgggccatgag
gttgagaatcaaacagttcgcagtgcattgcctcgccgttttggtgcacctggtctccca
gagctgaatgcatcacaagttcttgctgtgaagaatgtcctccagaagcctataagtttg
attcaaggtccacctggaacaggaaaaactgtcacttctgccgccattgtatatcatatg
gctaaacagggacaaggacaggttttggtgtgtgccccaagtaatgtagctgtagatcag
ctagctgagaagataagtgccaccggcttaaaggttgttaggctatgtgcaaaatcaagg
gaagctgttagttctcctgttgagcatctcacccttcactatcaggttagacatctagac
acttcagagaaaagtgaacttcacaagttgcaacagttgaaagatgaacaaggagaactg
tccagtagtgatgagaaaaaatacaaagctctgaaacgagcaacagaaagggaaatttct
caaagtgctgatgtcatatgttgcacttgtgttggtgctggagatcctcggttggcaaat
tttaggtttcgccaggtacttattgatgagtcaactcaggcgactgaaccagagtgtctc
attcctttggtacttggggcgaaacaggttgtttttgttggtgaccattgccagcttggt
cctgtcattatgtgcaagaaagctgctcgtgctgggttagcccagtctctctttgaacgc
cttgttttacttggtgtgaaaccaattagattgcaggttcaatatcgcatgcacccatct
ctttctgaatttccatccaacagcttttatgaaggcactctgcaaaatggtgtgactgtc
aatgagagacagtcatcaggcattgatttcccttggcctgtgccaaatcgtccaatgttc
ttttatgtccagatgggacaagaagagataagtgccagcgggacatcctatctaaatcgt
acggaggctgcaaatgttgaaaaaattgtaactacgtttttgaggagcggtgtggtccct
agtcagattggagtgataacaccttacgagggacagagagcatatattgtgaattatatg
tcaagaaacggtgcccttaggcagcaactatacaaggaaattgaggttgcaagcgttgat
tcatttcagggaagggaaaaggactacattattttgtcttgtgttaggagcaatgaacat
cagggcattggatttcttaatgatcctcggagattgaatgtagctctaacccgtgctcga
tatggtattgtcatcttgggaaacccgaaagttctaagtaagcagcctttgtggaatagc
ttattaactcactacaaggaacatgagtgcttggttgaaggacctttgaataacttaaag
cagagtatggttcaatttcaaaagcccaaaaagatttataacgataggaggcttttcttt
ggtggtggacctggaattgtccctaatgataattttgggtctgtcgcctcagctagccca
aatgctgatagaagaaactcccgtgccaggggatcttatatgccacctgccccacccaat
ggtacccacaagcctggtgctcatcctgctgggtttccaatgcctcgggtccccattcca
ccatttcatggtgatccaccttctcaaccatatgctattccgactcgtggagctgtgcat
ggaccaattggagctgttcctcaagtccctcagcccggaagtcgaggttttggtgctggg
cgcggcaatgctggtgcacctattggaagtcatctcccacaccagcaaggcactcagcaa
ggcaatgggaacattggatctttcaatttttcttccctggagaatccaaatagccagcca
tctgtgggtagtgcattatctcagcctggatacattaataatattccagttcagggatcg
agccaaacatttcgtgatggattttccatggggggtatgtcccaggagttcttgggtgat
gacttcaaaagccagggatcgcatgttccttacaatgttgctgatttctccactcaggca
tctcaaagtggatatgctgtggattatgttacacagggagcccaaggcgggtttccaggc
aacttcttgaatcagaattctcaagctagattttctcgttttggttctggaaatgatttc
atgtctcaggattacatggctcatggatcacaagggctattcactcaggttggctttaat
gatccctcacaagatgatgcatcgcagagccactttggcataaccactccaaaccaactt
caatctcagggcttgatgaattctctttactctcagccctttgcccactacaacactcag
ccggtgaacttacaggctccacaacagcagtctcagcagggtcagggcacccaaaaccag
aaaatccattacaacggttga
DBGET
integrated database retrieval system
