Populus euphratica (Euphrates poplar): 105122527
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Entry
105122527 CDS
T05872
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
peu
Populus euphratica (Euphrates poplar)
Pathway
peu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
peu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105122527
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
peu03019
]
105122527
03041 Spliceosome [BR:
peu03041
]
105122527
03009 Ribosome biogenesis [BR:
peu03009
]
105122527
03016 Transfer RNA biogenesis [BR:
peu03016
]
105122527
Enzymes [BR:
peu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105122527
Messenger RNA biogenesis [BR:
peu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
105122527
Spliceosome [BR:
peu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
105122527
Complex C
U4/U6.U5 tri-SnRNP related factors
105122527
Ribosome biogenesis [BR:
peu03009
]
Eukaryotic type
Pre-60S particles
Helicases
105122527
Transfer RNA biogenesis [BR:
peu03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
105122527
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
DBC1
Motif
Other DBs
NCBI-GeneID:
105122527
NCBI-ProteinID:
XP_011019967
UniProt:
A0AAJ6TYI4
LinkDB
All DBs
Position
Unknown
AA seq
999 aa
AA seq
DB search
MENTLTPAKRKELEKEEEVQEEEKAEISGTPQKQDSALKKRILTRTCVHEVAVPHGYESN
KDETFHGTLSNPLYNGEMAKSYPFELDPFQKVSVACLERNESVLVSAHTSAGKTAVAEYA
IAMAFREKQRVIYTSPLKALSNQKYRELHQEFQDVGLMTGDVTLSPNASCLVMTTEILRG
MLYRGSEILKEVAWIIFDEIHYMKDRERGVVWEESIIFMPQVIKMVFLSATMSNATEFAE
WICHLHKQPCHVVYTDFRPTPLQHYVFPVGGAGLYLVVDESEQFREDNFMKLQDTFSKQK
AGEGNKSANAKASGRISKGGNASGGSDIYKIVKMIMERKFQPVIVFSFSRREVEQHAMSM
SKLDFNTQEEKDIVEQVFNNAILCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKEL
VELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGR
RGKDERGICIIMIDERMEMNTLKDMVLGKPAPLVSTFRLSYYSILNLMSRAEGQFTAEHV
IRNSFHQFQYEKALPDIGEKVSKLEEEAAVLDASGEAEVAGYHNLKLEMAQLEKKMMKEI
TRPERILYYLCTGRLIKVREGGTDWGWGVVVNVVKKPTAGLGTLPSKGAGYIVDTLLHCS
PGPSESGSRPRPCPPRPGEKGEMHVVPVQLPLICALSKVRISIPADLRPLEARQSILLAV
QELGNRFPEGLPKLNPVKDMKIEDPEIVELVNQIEELEQKLHAHPLHKSQDINQMKSFHR
KAEVNHEIQQLKSKMRDSQLQKFREELKNRSRVLKRLGHIDADGVVQVKGRAACLIDTGD
ELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQIHLRTELAKPLQQLQESARKIAE
IQYECKLDINVDEYVESTVRPFLVDVIYCWSKGASFSEVIQMTDIFEGSIIRSARRLDEF
LNQLRAAAQAVGEVSLESKFAAASESLRRGIMFANSLYL
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atggagaatacactaacacctgctaagagaaaagagcttgagaaggaggaggaagtgcaa
gaggaagagaaagcagagatttctggcacaccacagaagcaagattctgctctgaaaaag
aggattttgacacggacttgtgttcatgaagttgcagtcccacatgggtatgagtcgaat
aaagatgaaacctttcacggaactttgtcgaatccattgtataatggggagatggcaaaa
agttatccatttgaactcgacccttttcagaaggtgtctgtagcttgtttggaaaggaat
gagagtgttttagtctctgctcatacgtctgcagggaaaactgctgttgctgagtatgcg
attgcaatggctttcagagaaaagcaaagggttatttatacttctccgctgaaagccttg
agtaatcagaagtatagggaattgcatcaggagtttcaagatgttgggctgatgactgga
gatgttaccctgtcaccaaatgctagttgtttggttatgactacagagattcttaggggg
atgctttataggggttcagaaattttgaaggaagttgcttggattatttttgatgagatt
cactatatgaaggatcgtgaaagaggggttgtttgggaagagagtattatttttatgccg
caagtgattaaaatggtttttctttctgcgactatgtcgaatgccaccgagtttgcggaa
tggatttgtcatttgcataagcagccttgccatgtggtttacacagatttccgaccaact
cctttgcagcattatgtttttcctgtgggtggtgctgggttgtatcttgtggttgatgag
agtgagcagtttagggaggacaattttatgaagctgcaggatactttctctaagcagaaa
gctggtgaggggaacaagagtgcaaatgctaaagctagtggaaggatttcaaagggtggg
aatgcttcagggggttctgacatatacaaaattgtcaagatgattatggaacggaagttt
caaccagttatagtttttagcttcagtaggagagaggttgaacaacatgccatgtctatg
tctaagcttgattttaatacacaagaggaaaaggacatcgtggagcaggtttttaacaac
gcaatactctgcttgaatgaggaagacaggaatttgcctgctattgagttaatgttgcct
ctacttaagcgaggcattgctgtgcatcattccggtcttctccctgtaatcaaggaacta
gtagagcttcttttccaggaaggccttgtgaaggctctgtttgccacagagacatttgcg
atgggtttaaacatgcctgcaaagactgttgttttcacagccgttaagaagtgggatggc
gatagtcatcgttacattggatctggtgagtatatccagatgagtggaagggctggacga
cgtggtaaagatgagcggggtatttgtatcataatgattgatgaacggatggagatgaat
acactcaaagacatggttttgggcaaaccggctcctctagttagtactttcagactgagc
tactattcgatattaaatctaatgagccgtgctgaaggccagttcactgctgaacacgtg
ataagaaattcatttcatcaattccagtacgaaaaggctttaccagacataggggaaaag
gtttcaaaactggaagaggaagctgctgttcttgatgcatcaggagaggctgaagttgct
gggtatcataatctaaaacttgagatggcccagcttgagaagaagatgatgaaggaaata
acaaggcctgaaagaattctttattatctgtgcactggtcggttgatcaaggtaagagaa
ggaggaactgattggggttggggagttgtggtgaatgttgttaaaaaacccactgcagga
ttgggaacattgccatcaaaaggtgctggttatatagtagatactttacttcattgctct
cctggaccaagtgagagtggttcccggccaagaccatgtccgcctcggcctggagaaaag
ggtgagatgcatgtggttcctgttcagttgcctctgatctgtgctctaagcaaagtgagg
atatccattcctgctgacctccggccattggaagcaaggcaaagtatacttctagcagtg
caggagttagggaatcggtttcctgaaggccttccaaagcttaaccctgtaaaggacatg
aaaattgaggatcctgaaattgtggagttggttaaccaaattgaggaattggaacagaag
ttacatgcgcatccactgcacaagtctcaagatataaaccagatgaaaagttttcatagg
aaagctgaggtgaatcatgaaattcaacaacttaagtcgaaaatgcgtgattcccagctt
caaaaattccgtgaagaacttaagaaccgttcacgggtcttgaaaaggctcggtcatata
gatgctgatggtgtagtccaggtgaagggcagggcagcctgcttgatagacacaggagat
gaactacttgttacagaactgatgttcaatggtaccttcaatgatcttgatcatcaccaa
gttgctgctcttgcaagttgcttcattcctgtagacaagtcaagtgagcaaatacatttg
agaactgaacttgctaaaccattgcaacaactccaagagagcgcaagaaaaatagcagag
atacaatatgaatgcaaattggacataaatgtcgatgaatatgtggaatcaacagtcaga
ccgttcttggtggatgtgatttactgttggtcaaagggagctagtttttctgaggtcata
caaatgactgatatctttgagggtagtattatcagaagtgctagaagattagatgagttt
ctgaatcagttgcgtgctgctgctcaagctgtgggtgaagtcagtttagaaagcaaattt
gcagctgccagcgaaagccttcggcgaggtatcatgtttgcaaattctctttacctttaa
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