Populus euphratica (Euphrates poplar): 105122740
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Entry
105122740 CDS
T05872
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
peu
Populus euphratica (Euphrates poplar)
Brite
KEGG Orthology (KO) [BR:
peu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
peu03009
]
105122740
03012 Translation factors [BR:
peu03012
]
105122740
Enzymes [BR:
peu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
105122740
5.6.2.5 RNA 5'-3' helicase
105122740
Ribosome biogenesis [BR:
peu03009
]
Eukaryotic type
Other ribosome biogenesis factors
105122740
Translation factors [BR:
peu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
105122740
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
AAA_30
AAA_19
Viral_helicase1
DEAD
AAA_22
ResIII
nSTAND3
AAA_16
AAA
UvrD-helicase
RuvB_N
NPHP3_N
PIF1
PhoH
AAA_25
ABC_tran
UvrD_C_2
AAA_7
Zot
ATPase
IstB_IS21
T2SSE
AAA_33
TPK_catalytic
Mg_chelatase
TsaE
SRP54
DUF2786
Motif
Other DBs
NCBI-GeneID:
105122740
NCBI-ProteinID:
XP_011020327
UniProt:
A0AAJ6U0A7
LinkDB
All DBs
Position
Unknown
AA seq
647 aa
AA seq
DB search
METAKTKKKAAALSLQEFISITSPLLDLEKESEISASIGSGALRNLDSAQKKGSTILNLK
CVDAQTGLMGKTLLEFQSNKGDVLPAHKFGTHDVVVLKPNKADLGSPALGQGVVYRLKDS
SITVAFDDVPDEGLNSPLRLEKVANEVTYRRMKDALIQLSKGVHRGPAADLIPVLFGERQ
PTMSKKDVTFTPINSHLDHSQKDAISKALSSKNVFLLHGPPGTGKTTTVVEIILQEVKKG
SKILACAASNIAVDNIVERLVPHRVKLVRLGHPARLLPQVLDSALDAQVLRGDNSALAND
IRKEMKALNGKLLKTKDKSTRRDIQKELRTLSKEERKRQQLAVIDVIKNADVVLTTLTGA
FSHKLNTTSFDLVIIDEAAQALEITCWLALLKGSRCILAGDHLQLPPTIQSVEAEKKGLG
RTLFERLTDLYGDEVTSMLTVQYRMHELIMNWSSKELYNSKIKAHPSVGAHMLFDLEGVK
RSSSTEPTLLLVDIAGCDMEEKKDEEDSTMNEGEAEVAVAHAKRLVQSGVQASDIGIITP
YSAQVVLLKILKNNDDKLKDLEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDHRRMN
VAVTRARRQCCLVCDTETVSGNGFLKRLIDHFEEHGEYLSASEYLNE
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atggagacagcgaaaacgaaaaagaaagcagcagctctctcgcttcaagaattcatctcc
attacgtctcctttgctcgatttagagaaggaatcagagatatcagcatctattggttca
ggcgcgttaagaaatttagattctgctcagaagaaaggttctacgattctcaatttgaag
tgcgttgatgctcagacaggtttgatggggaagacgctactggagttccaatctaataaa
ggagatgttttacctgctcataagtttggcacacatgatgtggttgtcttgaaaccgaac
aaagctgatttaggatcccctgctcttggtcaaggtgttgtttatcggttaaaggactcg
tctattactgttgcttttgatgatgtaccggatgagggtttaaatagtccgctacgattg
gagaaagttgcaaatgaggtgacatatcggaggatgaaggatgccttgattcagttgagc
aaaggtgtgcatagaggccctgctgctgacttaattcctgttttatttggagaaagacaa
ccaacaatgtcaaaaaaggatgttacattcaccccaattaactcccaccttgatcactct
cagaaagatgccatttcaaaggcactgtcatcaaagaatgtatttttgctacatggacct
cctggaactggaaaaaccacaactgtggtggaaattatcttgcaagaagtgaaaaaagga
tcaaagattcttgcatgtgctgcttcaaacattgctgtcgacaacattgttgagcggctt
gttcctcacagagtaaagttagtgagattggggcatcctgcacgcttgctacctcaagta
ctggacagtgcactcgatgcacaggttctacggggggacaacagtgctcttgcaaatgac
attcggaaggaaatgaaggcattaaatggaaaattgttgaaaaccaaagataaaagcaca
agaagagacatacagaaggaactcaggactctttcaaaagaagaacgtaaaaggcagcag
ttggctgtgatagatgtaattaaaaatgcagatgtggtgttgacaactttgactggtgca
ttttctcacaagctgaatactacctcatttgatttggtgattattgatgaagctgctcag
gcacttgagataacttgctggcttgctttactgaagggttcaaggtgtatacttgcagga
gaccatcttcagcttcctccaaccatccaaagtgttgaagctgagaagaaagggttggga
agaaccctctttgaacgcctcacggatctgtatggagatgaagtcacttctatgctcact
gtccagtaccgcatgcatgaactaattatgaactggtcatctaaagagctttacaacagt
aagatcaaagcccatccgagtgttggtgcacatatgctttttgatcttgagggtgtcaag
agatcctcttctacagaaccaacccttcttcttgtagacatagctgggtgtgatatggag
gaaaagaaggatgaagaagatagcacaatgaatgagggagaagctgaagttgcagtggcc
catgcaaagagacttgttcagagcggagtccaggcttctgacattggaataattactcct
tattcagcacaggttgtcttgctcaagatattgaaaaacaatgatgataagctaaaggat
ttggaaatctcaacagtggatggtttccagggtcgagagaaggaagccatcattatttca
atggttcgatcaaactcaaagaaagaggtggggtttttgagtgaccacaggcgaatgaat
gtggctgtgacacgggcaagaagacagtgttgtcttgtatgtgacacagagacagtgagt
ggtaatgggttcttaaagcgattaattgatcattttgaggagcacggggagtatctaagt
gcatcagagtacctcaatgaatga
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