Populus euphratica (Euphrates poplar): 105124887
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Entry
105124887 CDS
T05872
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
peu
Populus euphratica (Euphrates poplar)
Pathway
peu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
peu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105124887
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
peu03019
]
105124887
03036 Chromosome and associated proteins [BR:
peu03036
]
105124887
Enzymes [BR:
peu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105124887
Messenger RNA biogenesis [BR:
peu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
105124887
mRNA degradation factors
5'-3' decay
Decapping complex
105124887
Chromosome and associated proteins [BR:
peu03036
]
Eukaryotic type
Gene silencing
piRNA pathway
105124887
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
TFIIA
Motif
Other DBs
NCBI-GeneID:
105124887
NCBI-ProteinID:
XP_011023369
UniProt:
A0AAJ6XLS4
LinkDB
All DBs
Position
Unknown
AA seq
500 aa
AA seq
DB search
MNNNNRGRYPPGIGAGRGGGMNANPNFQSRVPQQQYVQRNFGQNHHQQQYYQHQQHQQHH
NQQQQQQQQWLRRNQLTAADSNVDEVEKTVQSEAVDSSSQDWKAKLKIPPADTRYRTEDV
TATKGNDFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAF
CVPALEKIDQDNNFIQVVILVPTRELALQTSQVCKELGKHLKIQVMATTGGTSLKDDIMR
LYQPVHLLVGTPGRILDLAKKGVCILKNCSMLVLDEADKLLSPEFQPSIEQLIRFLPSNR
QILMFSATFPVTVKDFKDRYLEKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSK
LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCT
DLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQ
ELGTEIKQIPPHIDQAIYCQ
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacaacaatagaggaaggtatccgccggggatcggtgctggtagaggcggaggt
atgaacgcgaaccctaattttcaatcaagggttccgcaacagcagtatgtgcagagaaat
ttcgggcaaaatcatcaccaacaacaatactatcagcatcaacagcatcaacagcatcac
aatcagcaacagcagcagcagcagcagtggttgaggaggaatcagttaactgctgcggat
tcgaatgttgatgaggttgaaaagactgttcagtctgaggctgttgactcgagttcacaa
gattggaaggcaaagctaaagataccaccagcagatacacgatacagaactgaggatgtg
acagccacaaaggggaatgattttgaggactattttctgaagcgtgagttgcttatggga
atatacgagaagggttttgaaagaccatctcctattcaggaagagagcataccaattgct
cttactggtagcgatattcttgctagagctaaaaatgggacagggaaaacagctgcattt
tgcgtccctgcccttgaaaaaattgaccaagataacaattttattcaagttgtgatactt
gtgccaacacgtgagttggctcttcagacatcacaggtttgtaaggagctagggaagcat
ttgaaaattcaagtgatggccaccactggcggtactagtttaaaagatgacattatgcgt
ttatatcaaccagtccatttacttgttggaactccaggaagaatacttgatcttgcaaaa
aagggcgtgtgtattttgaaaaactgttcaatgcttgttttggatgaggctgataagctt
ttgtctccagagtttcaaccttcaatagagcagcttattcgttttcttccttcaaatcgt
cagattttgatgttttcggccacatttcctgttaccgttaaggattttaaagatagatat
ctagagaagccttatgttatcaatcttatggatgaacttactctcaagggtattacacaa
tattatgctttcgttgaagaacgacagaaagtccattgcctgaacactcttttctctaag
ctgcaaataaaccaatcaatcatcttttgcaactcagtgaaccgggtagaattactggcc
aagaagatcacagaacttggctattcatgtttctatatccatgcaaagatgttacaggac
catcgcaacagagtatttcatgacttccgcaatggtgcatgcaggaatcttgtctgtact
gatctttttaccaggggtatagacatccaagcagtgaatgttgttataaactttgacttt
cccaagaactcagagacataccttcacagggttggtcgatcaggaaggtttggacacctt
ggtttggctgtgaatttgatcacttatgaggaccggtttaacctgtataggattgagcag
gaacttggaactgaaattaaacaaattcctccacatattgaccaggcaatatattgccaa
taa
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