Populus euphratica (Euphrates poplar): 105126236
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Entry
105126236 CDS
T05872
Name
(RefSeq) endoribonuclease Dicer homolog 1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
peu
Populus euphratica (Euphrates poplar)
Brite
KEGG Orthology (KO) [BR:
peu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
peu03036
]
105126236
Chromosome and associated proteins [BR:
peu03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
105126236
microRNA pathway
RISC loading complex
105126236
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
DEAD
DND1_DSRM
PAZ
dsrm
Helicase_C
ResIII
Dicer_dsRBD
Dicer_PBD
SNF2-rel_dom
SWI2_SNF2
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
105126236
NCBI-ProteinID:
XP_011025346
UniProt:
A0AAJ6XNN4
LinkDB
All DBs
Position
Unknown
AA seq
1970 aa
AA seq
DB search
MDSESNGRFSGIGGGAGPSYWLDACEDISCDIIDDFVDFDTSIVPELSVDNNSNVNNDFF
GGIDHILDSIKNGSGLPPLHNATTTANVSNGSRDCIAGDGWFINVENGVCHGSSVSQSNG
GDKENIDRKGQVENGGNGLNLSNGKREERFPNNFVKENGKKDEQSTEQGIEGDERCGKRA
RLCCYRNERVYSSRGQHEHRDRARGPSRKRSRDWDESDRRDRDISRRRDRYSGSNRRDGR
DRDWRGRELRGYWERDRSGSKDMVFRLGTWEADHNKEGREANDKIQECKGELEKKSEESK
EKVPEEQARQYQLDVLDQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKILAVF
LVPKVPLVYQQAEVIRERTGYQVGHYCGEMGQDFWDTRRWQREFETKQVLVMTAQILLNI
LRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTPKEKRPSVFGMTASPVNLKGV
SSQVDCAIKIRNLESKLDSIVCTIKDRKELEKHVPMPAEVVVEYDKAASLWSLHEQIKQI
EAAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYAL
GDLGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLERVVLLLQCQLTEGAVTDKDTK
VSDNGNGNIHDGPGFDEIEEGELPDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILL
RYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVRCASMIGHNNSQEMRTSQMQDTIA
KFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVER
ENLSHGAFLRNARNSEETLRKEAIERTDLSHLKDTSRLIAVDSIPGTVYQVESTGAVVSL
NSAVGLVHFYCSQLPSDRYSILRPGFIMEKHEKPGGPTEYSCKLQLPCNAPFEELEGPVC
SSMRLAHQAVCLAACKKLHEMGAFTDMLLPDKGSEEEKDKVDQNDEGEPLPGTARHREFY
PEGVAKTLQGEWILCGRDGCNNSKVLHLYLYGVKCLNSGASNDPFLTQVSNFAVLFGNEL
DAEVLSMSMDLFIARTMITKASLVFRGRLPITESQLASLKNFHVRLMSIVLDVDVEPSTT
PWDPAKAYLFVPMVSDKSVDPIKEIDWDLVENIIGTDAWSNPLQRARPDVYLGTNERTLG
GDRREYGFGKLRHGNAFGQKPHPTYGIRGAVAQFDVVKASGLIPKRGWDATETQKLELTK
GKLMMADTCVNADALMGRIVTAAHSGKRFYVDSICYDMTAEISFPRKEGYLGPLEYSSYA
DYYKQKYGVELIFKQQPLLRGRGVSYCKNLLSPRFEHSDSNEGDAEENLDKTYYVFLPPE
LCLVHPLPGSLVRGAQRLPSIMRRVESMLLAVELKEIINYPVPASKILEALTAASCQETF
CYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQYALNKGLQSYIQ
ADRFAPSRWAAPGVLPVFDEETKDGDSYLFDQEKSLAEDRTGMNHLDDAYENEIEDGELE
SDASSYRVLSSKTLADVVEALIGVYYVEGGKNAVNHLMKWIGIEVEFDHEELDGASRPFN
VPESVLRSVDFDKLEGALDIKFNDRGLLIEAITHASRPSSGVSCYQRLEFVGDAVLDHLI
TRHLFFTYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALEKQIRDFVREV
QDELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTAFVWKVFQPLLHPMVTPE
TLPMHPVRELQERCQQQAEGLEYKATRSGNLATVEVFIDGVQVGVAQNPQKKMAQKLAAR
NALVVLKEKETAEAKEKSDENGKKKRNGNQTFTRQTLNDICLRRNWPMPSYRCVNEGGPA
HAKRFTFAVRVNTTDRGWTDECVGEPMPSVKKAKDSAAVLLLELLNKRYS
NT seq
5913 nt
NT seq
+upstream
nt +downstream
nt
atggatagcgagagtaatggtaggttttcggggattggaggtggagctggtccgtcttac
tggcttgatgcatgtgaggatatttcttgtgatattatagatgattttgttgattttgat
acttcaattgttccagaattatctgttgataataattccaatgttaataatgatttcttt
ggagggattgatcacattcttgatagtatcaagaatggtagtggtcttcctcctcttcat
aatgctactacgacagctaatgtttccaatggaagtcgggattgcattgctggtgatggt
tggtttattaatgttgaaaatggagtttgccatgggagctcggtttcacaatcaaatggt
ggtgataaggaaaatattgacagaaaagggcaggtggagaatggtggtaatgggttgaat
ttgtccaatgggaagagagaagagaggttcccaaacaattttgttaaagaaaatgggaag
aaggatgagcagtccacggagcaaggtattgagggtgatgaaaggtgcggtaaaagggct
agactttgttgttatagaaatgagagggtgtattctagtagagggcagcatgagcatagg
gatagggcgagaggtcctagcaggaagagatcacgggattgggatgaaagcgatagaagg
gatagggatattagtcgaagaagagatagatatagtggtagtaataggagggatggcaga
gacagggattggaggggaagagaacttaggggttattgggagagggatcgttcagggtcc
aaagacatggttttccgattgggcacttgggaagctgatcataacaaagaaggaagggag
gcaaatgacaaaattcaggagtgcaaaggagagctagagaagaaatcagaggagagtaaa
gagaaagtccctgaagaacaggcccgccagtatcaattggatgttcttgaccaggctaag
aagaaaaatacaatagcttttcttgaaacaggggcagggaagacactcattgctgtactc
ctcatcagaagcatctgcaatgacttgcaaaggcagaataaaaaaattcttgctgtattt
ttagttccgaaggttccacttgtttatcagcaagcagaagttattcgtgagcgcactggt
taccaagtgggccattattgtggtgagatgggtcaagatttctgggatactcgaagatgg
cagcgtgagtttgaaacaaaacaggttttagtaatgacagcccaaattcttttgaacatt
ctgaggcacagcataatcaaaatggaagccataaatcttctcattctggatgagtgtcat
catgctgtgaagaaacatccatattctcttgtgatgtctgagttttaccatacaactccc
aaggagaagagaccatctgtttttggaatgacagcttctcctgttaacttaaagggtgtt
tcaagtcaggtggattgtgcaataaagatccgcaatcttgaaagtaaactggactcaatt
gtttgtacgataaaagaccgcaaggaactggaaaagcatgtaccaatgccggcagaggtt
gtggtggagtacgacaaagcagccagcttgtggtcccttcatgaacaaataaagcaaatt
gaagcggctgttgaggaagctgcacagtcaagctcgagaagaagtaaatggcaatttatg
ggagctagggatgctggggccaaggaagagctgcgccaggtttatggtgtctctgaaaga
acagaaagtgatggagctgctaacttaattcaaaagttgagggcaattaattatgcactt
ggtgatctgggtcagtggtgtgcttacaaggttgcacaatcctttctgactgccttacaa
aatgacgagagagcaaactatcagcttgatgttaagtttcaagaatcctacctggaaaga
gtcgtgttgctcttacaatgccaattaacagagggtgctgttacagacaaggacacaaaa
gtttcagacaatgggaatggcaatattcacgatgggcctggttttgatgagattgaggag
ggagagctccctgacagtcacgttgtctctggtggagaacatgttgatgtgataatagga
gctgctgtagctgatggaaaagtgacccctaaagtgcagtcactgattaaaatacttctc
agatatcagcatacggaggattttcgggcaatcatctttgttgagcgcgtagtagctgct
ttggttcttcctaaggtctttgcagaacttccatctctaagttttgttaggtgtgcaagt
atgatagggcacaataatagtcaggaaatgagaacaagccaaatgcaagacacaattgcc
aaatttcgagatggtcgtgtgacattgttagttgctaccagtgtcgctgaggaaggactt
gatattagacaatgcaatgttgttattcgctttgatcttgcaaaaactgttcttgcatat
attcagtctcgaggtcgtgcaagaaaaccaggctctgattacatcttgatggtggagagg
gaaaacctgtctcatggagcattcttaaggaatgctaggaatagtgaggagaccctgagg
aaagaagcgattgagagaactgacctcagtcatcttaaggatacttcaaggttaattgca
gtagattcaataccaggaactgtgtatcaggtggagtctactggtgctgttgtgagctta
aattctgctgttggacttgttcatttctattgctctcagttacccagtgacaggtattca
atacttcgtcctgggtttatcatggagaagcatgagaagccaggaggtcccactgaatat
tcatgcaagcttcagcttccttgtaatgcaccatttgaggagcttgagggtcctgtatgc
agttcaatgcgccttgcacatcaggctgtttgtttggctgcttgcaagaagcttcatgag
atgggagcatttactgacatgctcttgccagacaagggaagtgaggaagaaaaggacaag
gttgatcagaatgatgaaggtgaaccacttcctgggactgctaggcatcgggagttctat
cctgaaggtgtagctaagacactccagggagaatggatcttatgcggaagggatggttgc
aacaactccaaagtccttcatctctacttgtatggagtcaaatgcttaaacagtggcgct
tcaaatgatccattcttgactcaagtttcaaattttgcagtgctttttggcaatgagctg
gatgcagaggtcttatcgatgtcgatggatctatttatcgctcgaaccatgataacgaag
gcatctcttgtctttcggggtcgcttgcctattacggaaagtcagctggcatcccttaaa
aattttcatgtaaggttgatgagcattgtactggatgtggatgttgaaccttccaccact
ccatgggatcctgcaaaagcttatttattcgtccctatggttagcgataagtctgtagat
cctataaaagaaattgactgggatctggttgaaaatataattggaacagatgcttggagc
aatcctcttcagagagctcgaccagatgtttaccttggtacaaatgagaggacacttggt
ggagacaggagggagtatggttttgggaaattgcgacatggaaatgcttttggacagaaa
cctcatcccacttatggcatcaggggagctgtagcacagtttgatgttgtgaaagcttct
ggattgattcctaagaggggatgggatgcaactgagacacaaaaactggagctgaccaaa
ggcaaattgatgatggctgatacttgtgtcaatgctgatgctttgatggggagaattgta
acagcagctcactccgggaagaggttttatgtggattccatatgctatgatatgactgcg
gagatctcatttccaagaaaagagggttatcttggtcctctagagtacagctcatatgct
gattactacaagcaaaagtatggagttgaattgatatttaagcagcagcctttactaaga
gggcgtggtgtttcatactgcaagaatctcttatcccctcgatttgaacactcagattca
aatgaaggtgatgctgaagagaatcttgacaagacttactatgtgtttcttcctcctgag
ctgtgtctggtgcatcctcttcctggatcacttgttcgaggtgcccagagattaccatcg
ataatgaggagggttgaaagcatgctgcttgctgttgaacttaaggagataataaattat
ccagtccctgcttcaaagatcttggaagccttgactgctgcttcatgccaagagacattc
tgctatgaaagagcagagcttctaggagatgcttacctgaaatgggtggttagtcgattt
ctttttctgaagtatccccagaaacatgagggtcaacttactagaatgaggcaacaaatg
gtaagtaatatggttttgtatcaatatgcacttaacaaaggacttcagtcatatatccaa
gcagatcgctttgctccatctcgatgggctgctcctggagtgttgcctgtctttgatgag
gaaacaaaagatggagactcgtacttatttgatcaggagaagtcacttgctgaggataga
accggaatgaatcatcttgacgatgcgtatgaaaatgaaattgaagatggtgaacttgag
agtgatgctagttcttacagagtcctctctagcaagacattggcagatgttgttgaagca
ttaattggtgtttattatgttgaaggtgggaaaaatgctgttaaccaccttatgaaatgg
attggaattgaggtagagttcgatcatgaagagctagatggtgcatctaggccattcaat
gttccagagagtgttcttaggagtgttgactttgataagttagaaggtgccttggatatt
aagttcaatgatcgtggcttgttgatagaagccataacgcatgcttcacgaccatcttct
ggagtatcctgctaccaacgattagaatttgttggtgacgcagtcttagatcatcttatt
actaggcacttgttttttacatatacaaatctgccccctggtcgcctgacagacttgcga
gctgcagctgtaaacaatgaaaattttgcacgtgttgcagttaaacataagcttcatgtg
caccttagacatgggtcaagtgcccttgaaaagcagattcgggactttgttagggaagtt
caagatgaactattgaagccagggttcaactcctttggtttgggagattgcaaagctcca
aaggttcttggtgacatcgttgaatccattgctggtgctatttttcttgacagcggacga
gatacagcgtttgtgtggaaggtttttcaacctctgttgcatccaatggtcactccagaa
accctgccaatgcatcctgtaagggagcttcaggaacggtgccagcaacaggctgaagga
ttggaatacaaagccactcgaagtggcaatttggctactgttgaagttttcattgatggt
gttcaggtaggagttgcacaaaatccacaaaagaaaatggcacagaaactcgctgctagg
aatgcacttgttgttttgaaagagaaggaaacagctgaagccaaggaaaagagtgatgaa
aatgggaagaagaaaaggaacggcaaccaaacttttaccagacaaacattaaatgatatc
tgcttgcgtagaaattggcctatgccatcatatcggtgtgtcaatgagggtggtcctgca
catgcaaagaggtttactttcgcagttcgtgtgaatactaccgataggggatggacagac
gagtgtgtgggagagccgatgccgagtgttaagaaggccaaagactctgctgcagttctt
ctcttggaactattaaataaacggtactcatga
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integrated database retrieval system
