Populus euphratica (Euphrates poplar): 105127180
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Entry
105127180 CDS
T05872
Name
(RefSeq) putative CCR4-associated factor 1 homolog 8
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
peu
Populus euphratica (Euphrates poplar)
Pathway
peu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
peu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105127180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
peu03019
]
105127180
Messenger RNA biogenesis [BR:
peu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105127180
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105127180
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
105127180
NCBI-ProteinID:
XP_011026650
UniProt:
A0AAJ6UC28
LinkDB
All DBs
Position
Unknown
AA seq
304 aa
AA seq
DB search
MAASGAAAQITAVWRQNFQREIFRLDAALFRFPVVSFDTEFPGFFRNTPIDATDLTRYED
LRHNVDPLRLIQFGITVADASGKIGGTWEFNLRFDLSKDLFVSQSIQFLQDNGIDFDKLR
RAGIDFDMFSQLLSRVVAKHRNLCWVTFHGLYDLSHTLRTVTNRPLPHSVPGFTSLLGIV
FGHVVDIKYMARFCQGLRGGELGLTAIAKILNVERVGGAHQAGSDSLLTARVYTKMKMVY
KIDETLCMGCLYGISSRICKPIVVPNTNGRCFIPYFSPPAPFQRCIPPHCCGFMQAAPTF
SHVL
NT seq
915 nt
NT seq
+upstream
nt +downstream
nt
atggctgcttctggtgctgccgcccagatcactgcggtgtggagacagaattttcagcga
gagattttcagactggacgctgccctgttcagatttccagttgtctcttttgatacagag
tttcctggtttctttcgaaacactccgatagacgccactgacttgactcgttacgaggat
ttgaggcataatgttgatccattaaggttaatccaatttggtatcaccgttgcagatgca
agtggcaaaatcgggggcacttgggagttcaatttgcggtttgatctgtcgaaggatttg
tttgtctctcagtctatacaattcttgcaagacaatggcatcgattttgacaagctaaga
agagctgggattgatttcgacatgttctcacagttgttgtcacgtgtagttgctaagcat
cgaaacctttgttgggttaccttccatggcttgtatgatctgtcgcacacattgaggaca
gtgacaaacaggccattgccccattctgtgcctggttttacgtccctacttggtattgtg
ttcggtcatgtggtggatatcaaatacatggctcgcttttgccagggattacgtggtggt
gagttaggcttgacagccattgctaaaatcttgaacgtggaaagagttggtggggcacat
caagcagggtctgattctttgttgacggctcgtgtgtacacaaagatgaagatggtatat
aaaattgatgagactctttgcatggggtgtttgtatggcatctcatctagaatttgcaag
ccgattgttgtgcctaataccaatgggcgctgctttattccgtacttcagccctccagca
ccgttccagcgttgcattcctccccattgctgtggtttcatgcaagctgctccaactttt
agtcatgtcttgtag
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