Populus euphratica (Euphrates poplar): 105127436
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Entry
105127436 CDS
T05872
Name
(RefSeq) regulator of nonsense transcripts UPF2-like
KO
K14327
regulator of nonsense transcripts 2
Organism
peu
Populus euphratica (Euphrates poplar)
Pathway
peu03013
Nucleocytoplasmic transport
peu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
peu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105127436
03015 mRNA surveillance pathway
105127436
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
peu03019
]
105127436
Messenger RNA biogenesis [BR:
peu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
105127436
mRNA cycle factors
P-body specific factors
105127436
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Xpo1
Motif
Other DBs
NCBI-GeneID:
105127436
NCBI-ProteinID:
XP_011027031
UniProt:
A0AAJ6UDB3
LinkDB
All DBs
Position
Unknown
AA seq
1189 aa
AA seq
DB search
MDHHEDESRGGSETPRKEDDEEAVARLEEMKKSIEAKVALRQSNLNPERPDSGFLRTLDS
SIKRNTAVIKKLKQINEEQREGLMEELRNVNLSKFVSEAVTSICDAKLRTSDIQAAVQIC
SLLHQRYKDFSPSLVQGLLKVFFPVKSGEDLDVDKNSKAMKKRSTLKLLLELFFVGVTED
SSVFINIIKDLTSAEHLKDRDTTQTNLTLLASFARQGRVFLGLPLSGQEIHEEFFKGLNI
TTDQKKIFRKAFHTYYDAVAELLQSDHASLRQMEHENAKILNAKGELSDENVSSYEKLRK
SYDHLYRNVSSLAEALHMQPPVMPEDGHTTRLTSGEDISLPAAGKDSSALEALWDDEDTR
AFYECLPDLRAFVPAVLLGEAESKANDHSVKTQDQQSELAPESDQGQSTQDMAEVTAESG
ILQEGKSTEKGKDKEEKDKEKVKDPEKERGKEKDAERKGENEKEKLKSLEGTNLDALLQR
LPGCVSRDLIDQLTVEFCYFNSKSNRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKD
VSFMLLQMLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFRIAPASTVFSCLKACLDDF
THHNIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLC
KPPERSARVSKVRPPLYQYIRKLLFSDLDKSSIEHVLRQLRKLPWSECEAYLLKCFMKVH
KGKYGQIHLIASLTAGLSCYHDEFAVSVVDEVLEEIRLGLELNDYGMQQRRIAHMRFLGE
LYNYEHVDSSVIFETLNLILVFGHDTPEQDVLDPPEDCFRIRMVIILLETCGHYFDRGSS
KRKLDRFLIHFQRYILSKGALPLDVEFDLQDLFVELRPNMIRYTSIEEVNAALIEHEENE
RIVSTDKANSEKHSDIDKRLSRSTSSIISSNGQRTTNGNEENGLHDIGGSDSDSGSGTID
QDGHDEEELDEENHDDRCDTEDEDDDGGGPASDGDDEVHVRQKFAEADPHEVASFEQELR
AVMQESMEQRRQELRGRPALNMVIPMNLFEGSPRDHHGRGAGGESGDEDEEAGGNKDVQV
KVLVKRGNKQQTKQMYIPRDCSLVQSTKQKEAAEFEEKRDIKRLVLEYNDREEEENNGLG
NQTLNWMPGGSSRVTSRSSTWEGSRGRGAGSRYGYYHHSGSGLYRGRRR
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atggatcaccatgaagatgagagccgtggtggaagtgaaactcctagaaaggaagacgac
gaggaagctgttgctcgacttgaggaaatgaagaaatctatcgaggcaaaagttgctctt
cgtcaaagcaatttgaaccctgaaaggcctgactcaggatttctcaggacattggattcc
agcattaagcgcaatacagcagttattaaaaaattaaagcagataaatgaggaacagagg
gaaggattgatggaagagttgcgaaatgtgaaccttagcaaatttgtcagtgaagctgta
acatccatttgtgatgcgaaacttagaacttctgacatacaagcagctgttcagatctgt
tcactgcttcatcaacgatacaaagacttctcgccaagcctagtacaagggctcttgaaa
gtcttttttcctgtaaaatctggagaagacttggacgtggacaagaactcaaaggctatg
aagaagcgaagcaccttaaagctgcttttggaacttttctttgttggagttacagaagac
agcagcgttttcatcaatattattaaggatcttaccagtgcagagcacttaaaggacaga
gatactacccagacaaatctgactctccttgctagttttgctcgacaaggaagagttttt
ctgggacttccactatctggacaagaaattcatgaagagttttttaagggccttaacatc
acgacagatcaaaagaaaatcttcaggaaggccttccacacatactatgatgctgtcgct
gaactacttcagtcagatcatgcatcacttcgtcaaatggagcatgaaaatgcaaagatt
ttgaatgctaaaggagagctgagtgatgaaaatgtttcatcatatgaaaagctgcgaaaa
tcttatgaccatttgtaccgtaatgtgtcatctttagcagaagcacttcatatgcaacct
ccagtgatgccagaagatggtcatacaactaggcttactagtggagaagacatttcattg
cctgctgcagggaaagattcttctgccctcgaagctttgtgggatgatgaagatactaga
gccttctatgaatgcttaccggatctcagagcatttgttccagcagtgttattgggagag
gcagaatccaaagcgaatgatcattctgtgaagactcaagatcaacaaagtgagctggcg
cctgaatcagaccaaggccaatccacccaagacatggcagaggttactgcagagtctggc
attttgcaggagggaaaaagtacggagaaaggaaaggataaggaagagaaagataaagag
aaagtaaaagatcctgaaaaagagagaggcaaggaaaaagatgcagagagaaaaggagaa
aatgagaaggagaaactcaaaagtcttgaagggactaatctggatgctctgttacagagg
ctccctggttgcgtcagccgtgacctaattgatcaattgactgtagagttttgttatttt
aattcgaagtcaaatcggaaaaagcttgtgagggcattatttaatgtacccaggacatct
ctggaactgctaccatactactcacgcatggttgccactctctcaacttgcatgaaggat
gtgtctttcatgctcttacagatgttagaggaggagttcaatttcttaatcaataaaaag
gaccaaatgaacattgaaacgaagatcagaaatattagatttattggagagctatgcaag
ttcagaattgcaccagcaagcactgtttttagttgcttgaaggcttgtttggatgatttc
actcaccataacattgatgttgcttgcaatcttcttgagacatgtggccgttttctgtat
cgttctcctgaaactactgtgcgcatggctaatatgttggagatacttatgcgcttgaaa
aatgtcaaaaatttggatcctcggcatagcacccttgtagaaaatgcttactatctgtgc
aaaccacctgaaaggtctgcacgagtgtctaaagtccgtcctcccttgtatcagtatatc
agaaaattactattctccgatctagacaagtcttctattgagcatgtgctcaggcaactt
cgtaaattaccatggagtgaatgtgaggcataccttttaaaatgctttatgaaggttcat
aaagggaagtatggtcaaattcacttgattgcttctctcactgctggcttgagctgttat
catgatgaatttgcagtgtcggttgttgacgaggttttggaggagattaggcttgggctt
gaattaaatgactatgggatgcagcaaaggcgcatagcccacatgcgattcttgggggaa
ctatacaattatgaacatgtggattcttctgtgatttttgagactctcaacttaatcctt
gtctttggtcatgacactccggagcaagacgtgctagatccaccagaggattgtttccgc
atcaggatggttatcattcttctggagacttgtggacactactttgaccgaggttcttct
aagaggaaacttgatcgatttctaatacactttcagaggtatattctcagcaaaggtgca
ctacctcttgatgttgaatttgacttacaggacttatttgtggaattacgtccaaatatg
atacgatatacatccattgaagaagttaatgctgctcttatagaacacgaggagaatgaa
cgtattgtctccaccgacaaggccaatagtgaaaagcactctgacattgataaacgattg
agtaggtctacttccagtatcatatcttccaatggacaaagaaccacaaatgggaatgag
gaaaatggattgcatgacattggtggcagtgacagtgattcaggcagtggcaccattgac
caggatggacatgatgaagaagagttagatgaagagaatcatgatgataggtgtgacacg
gaagatgaggatgatgatgggggtggacctgcttctgatggggatgacgaagtccacgtc
agacaaaagtttgcagaggcggaccctcatgaagtagctagttttgagcaggagctgagg
gctgtaatgcaggagagcatggagcaacgcaggcaggaactccgtggtcggccagcatta
aatatggtgatacccatgaacttgtttgaggggtcccctagggatcatcatggaaggggg
gctggaggggaaagtggtgacgaggatgaggaagctggaggaaacaaagatgttcaggtg
aaagttcttgtgaagcgtgggaataagcaacaaacaaagcagatgtacattcctagggat
tgctctcttgtgcagagcacaaaacagaaagaagcagctgagtttgaagagaaacgagac
atcaagagactggtgttggagtataatgatagagaagaggaggagaataacgggttgggg
aatcagacgctgaattggatgccaggtggtagcagcagagttaccagccgcagcagcaca
tgggaaggaagtagaggaagaggtgctgggtcacgttacgggtattatcatcattcaggc
agtggactctatcgtggcagaagaaggtga
DBGET
integrated database retrieval system
