Populus euphratica (Euphrates poplar): 105128434
Help
Entry
105128434 CDS
T05872
Name
(RefSeq) superkiller viralicidic activity 2-like 2 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
peu
Populus euphratica (Euphrates poplar)
Pathway
peu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
peu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105128434
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
peu03019
]
105128434
03041 Spliceosome [BR:
peu03041
]
105128434
03009 Ribosome biogenesis [BR:
peu03009
]
105128434
03016 Transfer RNA biogenesis [BR:
peu03016
]
105128434
Enzymes [BR:
peu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105128434
Messenger RNA biogenesis [BR:
peu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
105128434
Spliceosome [BR:
peu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
105128434
Complex C
U4/U6.U5 tri-SnRNP related factors
105128434
Ribosome biogenesis [BR:
peu03009
]
Eukaryotic type
Pre-60S particles
Helicases
105128434
Transfer RNA biogenesis [BR:
peu03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
105128434
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
Zot
Motif
Other DBs
NCBI-GeneID:
105128434
NCBI-ProteinID:
XP_011028399
UniProt:
A0AAJ6UGG7
LinkDB
All DBs
Position
Unknown
AA seq
1005 aa
AA seq
DB search
MASVKRKSIESQQEDHPLPPPQKQLREDNSNNNSRSSKIIGHGEAVACLHDVSYPGNYVP
PFSSITQTQKDSKPAKEFPFTLDPFQSEAISCLDSGQSVMVSAHTSAGKTVVALYAIAMS
LKNQQRVVYTSPIKALSNQKFREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYK
GSETTREVAWIIFDEVHYMRDRERGVVWEESILMAPKNARFVFLSATVPNAKEFADWVAK
VHQQPCHIVYTDYRPTPLQHYIFPSGGEGLYLVVDEKAKFREDSFQKAVNALVPKVEGEK
KRENGKWQKGLNVSRLGEESDIFKMVKMIIRRQYDPVILFSFSKRECEFLAMQMAKMDLN
QDDEKANIETIFWSAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQ
EGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDDR
GVCILMVDEKLEPSTAKMMLKGSADSLNSAFHLSYNMLLNQMRCEDGDLENLLRNSFFQF
QADRALPDLEKQAKVLEEERNSMVIEEEENLKNYYDLIQQYKSLKKDVRDIVYSPKHCLS
YLQSGRLVCIQCTESDDKSPSFLIEDLVTWGVIVNFDRVKGVSDVDVDDAIRKPENANYT
VDVLTRCVVTKDGVAKKKIKVVPLTEHGEPLIVSIPIDQINILSSARLYMSKDLLPLEVR
ENTLKQVSEFLSRKPSGLPMDPEGDMNIQSSSYKKAVRRIEALEHLFEKHEIAKSPLIKE
KLKVLHTKQELTARIKLIRKSMRSSTALAFKDELKARKRVLRRLGYITSDDVVELKGKVA
CEISSADELTLTELMFNGVLKDIKVEEMVSLLSCFVWQEKLQDAAKPREELDLLFTQLQD
TARRVAKIQLECKVQIDVENFVSSFRPDIMEAVYAWAKGSKFYEIMEITKVFEGSLIRAI
RRLEEVLQQLIEAAKSIGETELEAKFEEAVSKIKRDIVFAASLYL
NT seq
3018 nt
NT seq
+upstream
nt +downstream
nt
atggcttcagtgaagagaaaatccattgaaagccaacaagaggaccatcctcttcctcct
cctcagaaacaactcagagaagataacagcaacaacaatagtcgcagttcgaagattatt
gggcatggcgaagcagttgcgtgtctgcacgacgtgtcgtatccagggaattatgtccct
cctttttcttcaatcactcaaactcaaaaggactcaaaacccgcaaaggaatttcctttc
actctcgacccttttcagtctgaagccatcagttgccttgacagtggccaatctgtgatg
gtctcagctcatacatcagctgggaaaacagtagtagcattatatgcaatagctatgtct
ttgaagaatcaacaaagggttgtttacacgtcacccatcaaagcacttagcaatcagaag
tttagggagttcaaggaggagttttctgatgttggtctcatgaccggtgatgttaccatt
gaccctaatgcttcttgcctggtgatgacaacggaaatttggcgaagtatgcagtataaa
gggtcggaaactactagggaagtagcttggattatctttgatgaggttcattatatgcgt
gatcgagaaagaggtgtggtttgggaggaaagcattctcatggctcccaagaatgctaga
tttgtcttcctttctgccactgttcctaatgccaaagaatttgctgattgggttgcaaag
gtccaccaacaaccatgtcacattgtttatactgattatcgaccaacacccctccaacac
tatatttttccctctggaggtgagggtttgtacctggtggtggatgaaaaggcaaaattt
cgggaggacagctttcagaaagcagtgaatgcattagttcctaaggttgaaggtgaaaag
aaaagggagaacgggaagtggcagaaaggcttaaatgtgagcagacttggtgaagaaagt
gacatatttaaaatggtaaaaatgatcattcgccgccagtatgatcctgtcattcttttc
tcatttagcaaaagagaatgtgaatttcttgccatgcagatggcaaaaatggatctaaat
caggatgatgagaaagctaatatagaaaccatcttttggagtgccatggacatgctatca
gatgatgacaagaagctacctcaggtttcaaatatgttacccctcttaaaacgaggtatt
ggtgtgcatcattctggcttgcttcccatcctgaaggaagtgattgagattttgtttcaa
gaagggctgatcaagtgtttgtttgctacagagacattcagcataggtttgaacatgcct
gccaaaactgtggtatttacaaatgtccgtaaatttgatggggacaaattcaggtggcta
tctagtggagaatatatacaaatgagtggccgggctggccgtcgaggaattgatgatcgt
ggggtatgcatccttatggtggatgagaagcttgagccttcaactgccaagatgatgctt
aaaggaagtgctgatagtttgaacagtgccttccatctaagctacaacatgcttttaaat
caaatgcgctgtgaagatggcgatcttgaaaatttgctccgcaattctttctttcagttt
caagcagacagggcccttcctgatcttgagaaacaagcaaaagtccttgaagaagagagg
aattcaatggtaattgaagaggaagaaaatctgaagaattattatgatctgatacagcag
tacaaaagtttgaagaaggatgttcgtgatattgtgtattctccaaagcactgcctgtcc
tatctgcagtctggcagactagtgtgtatccagtgcacagaaagtgatgacaagtcccct
tctttcttgattgaagacctagtcacatggggagtgatagtcaattttgatcgagtgaaa
ggtgtttcagatgttgatgtagatgatgcaattagaaaaccagaaaatgcaaattacacc
gtggatgttcttacaagatgtgttgtgaccaaagatggagttgccaagaaaaaaatcaag
gttgtcccattgacagagcatggagaacctctcattgtttctattcctattgatcagata
aatattttgagcagtgctcgcttgtatatgtcaaaggatcttttgccattagaagttcga
gagaacaccctgaagcaggtttcagaatttctttctagaaaacctagtgggttgccgatg
gatcctgaaggagacatgaatattcaaagcagctcatacaaaaaggcagttcgtcggata
gaggctttagagcacctgtttgaaaaacatgaaattgcaaaatctccacttatcaaggaa
aagctcaaagtcttacacacaaagcaagaattaacagccaggatcaagttaatcaggaaa
tcaatgcgctcttccacagcattggcgtttaaagatgaacttaaagctagaaaacgagtt
cttcggaggcttgggtatatcacgagtgatgacgttgtggagttgaaggggaaagtcgct
tgtgaaattagtagtgcagatgagctgactttgacagagctcatgttcaatggggttctc
aaggacataaaagtggaggaaatggtctctcttctctcatgctttgtgtggcaggaaaaa
ctccaagatgctgcaaaaccaagggaagaacttgacttgctttttacacaattacaagat
acagctcgaagggttgccaaaattcagcttgaatgcaaggtacaaattgatgtggagaat
tttgtgagttcatttcggcctgatatcatggaggctgtgtatgcctgggcaaaaggatcc
aagttctatgagatcatggaaattactaaggtttttgagggcagcttgatcagggcaatt
aggagactagaggaagttcttcaacagcttatagaagctgcaaagtctattggtgagaca
gagctagaggccaaatttgaagaggctgtttctaaaatcaagagagacattgtttttgca
gcatcactatacttgtag
DBGET
integrated database retrieval system
