Populus euphratica (Euphrates poplar): 105128849
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Entry
105128849 CDS
T05872
Name
(RefSeq) 5'-3' exoribonuclease 3-like isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
peu
Populus euphratica (Euphrates poplar)
Pathway
peu03008
Ribosome biogenesis in eukaryotes
peu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
peu00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
105128849
09123 Folding, sorting and degradation
03018 RNA degradation
105128849
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
peu03021
]
105128849
03019 Messenger RNA biogenesis [BR:
peu03019
]
105128849
03009 Ribosome biogenesis [BR:
peu03009
]
105128849
03016 Transfer RNA biogenesis [BR:
peu03016
]
105128849
Transcription machinery [BR:
peu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
105128849
Messenger RNA biogenesis [BR:
peu03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
105128849
Ribosome biogenesis [BR:
peu03009
]
Eukaryotic type
Pre-60S particles
RNases
105128849
Transfer RNA biogenesis [BR:
peu03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
105128849
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
105128849
NCBI-ProteinID:
XP_011028986
UniProt:
A0AAJ6UGT9
LinkDB
All DBs
Position
Unknown
AA seq
1087 aa
AA seq
DB search
MGVPAFYRWLAEKYPLVVVDVIEEEPVVIEGVKIPVDTSRPNPNNIEYDNLYLDMNGIIH
PCFHPEDRPSPASFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFR
AAKDAADAAAEEERLREEFEREGRKLPPKETSQTFDSNVITPGTEFMAVLSIALQYYIHL
RLNYDPGWKKIKVILSDANVPGEGEHKIMSYIRLQRNLPGYNPNTRHCLYGLDADLIMLA
LATHEVHFSILREIVFTPGQQDKCFLCGQMGHLAANCEGKAKRKAGEFDEKGNDVAVTKK
PYQFLNIWILREYLEYEFRIPNPPFEIDLERTVDDFIFICFFVGNDFLPHMPTLEIREGA
INLLMAVYKKEFRVLDGYLTDGSKPNLNRVEHFIQAVGSYEDKIFQKRARLHQRQAERIK
REKAQARRGDDAEPQNQPKSLVAVARFHGSRLASAPTPSPYQDDGTHSQTSDGKGSSSVR
RHKVAHLSSTANIGAAIVEAENSMEIEVCFPASGEVLENKEELKTKLKGLLREKSDVFNS
KNHGEDKVKLGEPGWKERYYEEKFSAKTLEEMEDIRRDVVLRYTEGLCWVMHYYYEGVCS
WQWFYPYHYAPFASDLTHLGELNISFELGSPFKPFNQLLGVFPAASSHALPVHYRKLMTD
PNSPIIDFYPTDFEVDMNGKRYAWQGIAKLPFIDESRLLAEVQKIEHTLTEEEARRNSMM
FDMLFVSSSHSLSESIYLLDNHCKQLNDKERAEVKERINPELSDGMNGYLSPCAGDTHPP
IFRSPVVSMEDILANEVICVIYRLPDPHTHITRPPAGVIFPKKTVDQGDLKPEPILWHED
SGRRPWENDRRNPPGTISAHHLGEASHRLVSNSLQQKIDCNGYGNHMHTPPPPYFAAPCG
PPHSFYSNGLCNHGHYGTLQSEIDYSHAGYPRSASPYMPPHYDHGYGSAGANPSYRRSRS
QNERENQMSGPHPRHVYHSPEFHQNGRPRYPHGPVAHTSIGTSTYAYQGGYDAYQSYQSP
GAGSHQQWGGRFPPPANHSNPSSDRFSALDHRGNKMPSQHGGANRRPQPPHGSANWRPHP
PAGYGRQ
NT seq
3264 nt
NT seq
+upstream
nt +downstream
nt
atgggagtgccggccttttatcggtggttagcggagaagtatccgttagtggtggtggat
gtgatcgaagaagaaccggttgttatcgaaggcgttaagattcctgtggatacaagtaga
cctaaccctaacaatatcgagtatgataatttatatctcgatatgaacgggattattcat
ccctgctttcatcccgaagacagaccttcgcctgcttctttcgatgaggtgtttcagtgt
atgtttgattatattgataggctttttgtgatggtgaggcctcggaaattgctgtacatg
gcaattgatggagttgcacctcgtgctaaaatgaatcagcagcgatctaggcgttttagg
gcagctaaagatgcagctgatgcggctgctgaagaagaaaggctaagagaggagtttgag
agggagggcaggaagcttccccctaaggagacatctcaaacttttgattccaatgttatc
actcctggaactgaattcatggctgttttgtcaattgcattgcagtactatattcatctt
agactaaattatgatcctggatggaagaaaattaaggtcatcctttctgatgcaaatgtt
cctggggaaggggaacacaaaatcatgtcctatatccgtcttcaaagaaaccttcccggt
tataatccaaatacacgccattgcctgtatggtttggatgcagatttaatcatgttggct
ctggctacccatgaagttcatttttcaattcttcgagagattgttttcactcctggacaa
caagacaaatgcttcctatgtggtcagatgggtcatttagcagctaattgcgaaggaaag
gcaaagagaaaggcaggagaatttgatgagaaaggcaatgacgttgctgtgaccaaaaaa
ccataccagtttctcaatatctggattcttagagagtatttggagtatgaattcagaatt
cccaatcctccgtttgagattgatttggaacgtactgtggatgattttatattcatatgt
ttctttgttggcaatgatttcctgccacacatgcccacactggagattcgtgagggtgca
atcaacttgctgatggctgtttataagaaggaatttagggtgcttgatgggtatttgaca
gatggcagcaagcctaatttaaatagagtggagcattttattcaagctgtgggttcatat
gaagataagatattccagaaaagagcacgattgcaccagcgtcaggcagaaagaattaag
cgtgaaaaggcacaggcaaggagaggtgatgatgcagagcctcaaaatcaacctaaatct
ttggttgcggttgcccgatttcatggctctcgtcttgcttcagctcccacaccttcacca
tatcaggatgatggaacacattctcagacatctgatggtaaaggatcatcctctgttcgg
aggcataaagttgcacatttgtcttcaacagccaatattggtgctgccattgttgaggca
gagaatagtatggaaatagaagtatgttttcctgcttcaggagaggtacttgaaaacaaa
gaagaattgaaaactaagcttaaggggttacttcgtgagaaatctgatgtttttaactca
aagaatcatggagaagacaaggtcaaattgggagaaccaggttggaaggaaagatattat
gaagagaagttttctgcaaaaactctagaggaaatggaagatatacggagagatgttgtt
ttgagatatacagaagggctgtgttgggtcatgcattattattatgaaggcgtttgttct
tggcagtggttttatccgtatcactatgcaccctttgcttcagatctcacacatcttggt
gaactgaacatcagttttgaacttggttctccattcaaaccattcaaccagcttttggga
gttttccctgcagcaagttcccatgctctccctgtacactataggaaattgatgactgat
ccaaattcacctatcattgatttttatcctactgattttgaagtggacatgaatggaaaa
cgatatgcatggcagggtattgcaaagcttcccttcattgatgaatctcgccttcttgca
gaggtccaaaaaattgagcacacactaacggaggaagaagcaaggagaaacagtatgatg
tttgacatgctttttgtgtcatcatctcattctctctctgagagcatatatttactcgat
aatcattgcaaacaattaaatgacaaagaacgagctgaagtcaaggagcgtatcaatcct
gagttgagtgatgggatgaatggctatttatctccttgtgctggagatactcaccctcct
atattcaggtctccagttgtaagcatggaagacattttggccaatgaagtcatatgtgtt
atatacagacttcctgatccacacacacacatcactcgtccccctgctggtgttatattc
cccaaaaagacggtggatcaaggtgatctgaaacctgaaccaattttatggcatgaggat
tctgggaggaggccttgggagaatgacagacgaaatccccctggaaccatctctgcccat
catcttggggaggcatcacatcgactagtttctaatagtctacaacagaagatagattgc
aatggctatggcaatcatatgcataccccaccaccaccttattttgcagctccctgcggc
ccaccacactctttctattcaaatggcctgtgcaatcatggacactatggaactttacaa
tcagaaatagattattctcatgcaggttatccccgttctgcaagtccttatatgccacct
cactatgaccatggatatggttcggcaggtgccaacccctcttatagaaggtcccgttct
cagaatgaaagagagaaccaaatgagtgggccacatccaaggcacgtgtaccactcacct
gaatttcatcagaatggtagaccaagatatccacatgggcctgtggcacatacgtcaatt
gggacctcaacatatgcttatcaaggtggttatgacgcctatcagagttaccaatcacct
ggagctggtagtcaccagcaatggggtggtaggtttcctccgcctgccaaccatagcaat
cccagcagcgaccgattttcagcactggatcatagaggaaataaaatgccatcacaacat
ggtggagcaaatcggagaccccagccacctcatggaagtgctaattggaggccccatcca
ccagctggatatggtcgtcaatga
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integrated database retrieval system
