KEGG   Populus euphratica (Euphrates poplar): 105129408
Entry
105129408         CDS       T05872                                 
Name
(RefSeq) pre-mRNA-processing factor 19 homolog 2-like isoform X1
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
peu  Populus euphratica (Euphrates poplar)
Pathway
peu03040  Spliceosome
peu04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:peu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    105129408
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    105129408
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:peu03041]
    105129408
   04121 Ubiquitin system [BR:peu04121]
    105129408
   03400 DNA repair and recombination proteins [BR:peu03400]
    105129408
Enzymes [BR:peu01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     105129408
Spliceosome [BR:peu03041]
 Complex B
  Other components
   Prp19 complex
    105129408
 Complex C
   Prp19-CDC5 complex
    105129408
Ubiquitin system [BR:peu04121]
 Ubiquitin ligases (E3)
  U-box type E3
   105129408
DNA repair and recombination proteins [BR:peu03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    105129408
SSDB
Motif
Pfam: WD40_Prp19 Beta-prop_WDR5 Beta-prop_THOC3 Beta-prop_WDR3_1st Beta-prop_IFT122_1st WD40 Prp19 WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd WD40_CDC20-Fz WD40_Gbeta Beta-prop_WDR3_2nd WD40_MABP1-WDR62_2nd EIF3I WDR55 Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd DSE1_N Beta-prop_WDR36-Utp21_1st ANAPC4_WD40 Beta-prop_NOL10_N Beta-prop_EML WD40_MABP1-WDR62_1st CFAP251_N WDR90_beta-prop_4th NBCH_WD40 Beta-prop_SCAP Beta-prop_WDR75_1st Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_Aladin Beta-prop_RIG_2nd Beta-prop_WDR19_1st Beta-prop_EIPR1 Beta-prop_VPS8 Beta-prop_SPT8 Beta-prop_DCAF12 U-box Beta-prop_WDR41 ASA1 PAC11 PAS_11 zf-Nse WD40_like Beta-prop_DCAF4 KNTC1_N B-prop_COPA_B_2nd TRAPP14_N PUMA_CC V_ATPase_I_N
Other DBs
NCBI-GeneID: 105129408
NCBI-ProteinID: XP_011029750
UniProt: A0AAJ6UI98
LinkDB
Position
Unknown
AA seq 524 aa
MHCSISGEVPEQPVVSKKSGLLYEKRLIERHISEYGKCPITGEPLTMDDIVPVKTGKIVK
PRTVQTASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK
ERDEARSLLAQAERQIPMSASEAVTENASVLSNGKRAAEDDDLGQPGKRVRPGISASIIT
ELTDCNATLSQQRKKRQIPPTLAPIGALERYTQLSSHPLHKTSKPGILSIDIQYSKDIIA
TGGVDATAVVFDRLSGQIVSTLSGHSKKVTSVKFVAEGEFFLTGSVDKTVRVWQGSEDGS
YDCRHILKDHTAEVQAVTVHATNNYFVTASLDNTWCFYDLSSGLCMTQVADTSKTDGYTS
AAFHPDGLILGTGTSEAVVKIWDVKSQANVAKFEGHVGPVTAISFSENGYFLATAAHDSV
KLWDLRKLKNFRTLNLYDSDTPTNSVEFDHSGSYLGIAGSDIRVYQVGSVKADWNCIKTL
PDLSGTGRATCIKFGPDANYIAVGSMDRNLRVFGLPGDEAPQES
NT seq 1575 nt   +upstreamnt  +downstreamnt
atgcattgctcaatttccggcgaggttccggaacagcccgtcgtttcgaagaagtctggg
cttttatatgagaagcgcttaatcgagagacacatatcggaatatggaaaatgcccaatt
actggggaaccacttactatggatgatattgttccagtcaaaacaggcaaaatcgtgaag
ccaagaactgtacagactgctagcatccctgggatgcttgggatgttccagaatgaatgg
gatggcctaatgttgtccaactttgcattggagcaacaattacatacagcaaggcaagag
ctaagtcatgcattataccagcatgatgctgcttgccgtgtaattgcaagacttaaaaaa
gaaagagatgaagcaaggtcattgcttgcacaagctgagaggcagatacccatgtctgca
tcagaagctgttacagaaaatgcttcagttcttagcaatggaaaacgagctgccgaggat
gatgatttgggtcaacctgggaagagagtacgacctggaatttctgctagcatcattaca
gagcttacagactgtaatgcaactctttcacaacagcggaaaaagcggcagattcctcca
acattggctcctattggtgctctagagaggtacacccaactttctagccatccacttcac
aaaactagcaagccgggcatcttatctattgatatccaatattccaaggatatcattgct
actggaggagttgatgcaactgctgtagtctttgatcggctatcaggacagattgtatcg
acactcagtggtcactcaaagaaggtgactagcgtaaaatttgtagctgagggtgaattt
ttcttaactggatcagtagataagaccgttcgtgtgtggcaaggatccgaagatggcagc
tatgattgcagacatatcctaaaggatcatactgcagaggtgcaagctgtcactgttcat
gcaacgaataactacttcgtgactgcttctcttgacaatacgtggtgcttctacgatctc
tcctctggtttatgcatgactcaggttgctgacacttccaaaactgatggctatacatct
gctgcctttcatcctgatggtctcatccttggaacaggcacttcagaagcagttgttaaa
atctgggatgtaaaaagtcaggccaatgttgcaaaattcgaaggtcatgttgggcccgta
acagcaatatctttctcagaaaatggatattttctggctactgctgcccatgatagtgtt
aagctgtgggatctgcggaaattgaaaaacttccggacactcaatctatatgattctgat
acacctacaaactctgtggaattcgaccacagtggatcttaccttggaattgcaggatca
gatataagagtttaccaagttggcagtgttaaagcagactggaattgtatcaaaactctt
cctgatttatccggaacaggaagagcaacttgcataaaatttggtccagatgccaattac
atagctgtgggatcaatggatcgcaacctccgggtatttggcctgcctggggatgaagct
ccacaggagtcatga

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