Populus euphratica (Euphrates poplar): 105130325
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Entry
105130325 CDS
T05872
Name
(RefSeq) putative uncharacterized protein At4g01020, chloroplastic isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
peu
Populus euphratica (Euphrates poplar)
Pathway
peu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
peu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105130325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
peu03041
]
105130325
Enzymes [BR:
peu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105130325
Spliceosome [BR:
peu03041
]
Complex C
Other components
Step II factors
105130325
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RBD_DEAH11
KH_DEAH11_2nd
KH_DEAH11_1st
KH_DEAH11
RRM_DEAH11
Helicase_C
IBR
OB_NTP_bind
DEAD
HA2_C
IBR_1
zf-C3HC4_2
zf-C3HC4
AAA_22
AAA_19
zf-RING_UBOX
ResIII
HA2_N
ABC_tran
KH_1
T2SSE
AAA_29
nSTAND3
Motif
Other DBs
NCBI-GeneID:
105130325
NCBI-ProteinID:
XP_011031072
UniProt:
A0AAJ6UJD1
LinkDB
All DBs
Position
Unknown
AA seq
1742 aa
AA seq
DB search
MRKSSFPPTTTRRNPAPPPHRRPPFTTNNNNNFPTTGNARRTSPNFIIHLHLDPTLAPSS
RRPDPNTVNSVISQCNPTPPPDHIIIPTTTTTKTKLTARLHFQQWSHTLNFMTTLWELRL
RGAHSFTPKLQSYILLPSDTEELRRNLTKKFSDYLKGLIKGVDSNVNDDENVVGRWQAKV
SEKSDEIAQLMKLLKGSNGMRGFSELNERKKGLVAERDLIVKRLEEFRASMKCILKYIEG
GREEEGERGLELFVFDGEIDWERIHRLVSREIRRLADGLPIYAYRQQILEKIHGNQVMVL
VGETGSGKSTQLVQFLTDSGIPGKESIVCTQPRKIAAISLADRVNEESRGCYENSSVMSY
PTFSSAQQFGSKVIFMTDHCLLQHYMNDTTLSGISCIIVDEAHERSLNTDLLLAMIRGLL
CERPDLKLVIMSATADAKQLSDYFYGCEIFHVEGRNFPVEVRYTPSSEGTASGNVSPYVY
DTLRITTEIHKQESEGTILAFLTSQMEVEWACEKFDDASAVALALHGKLPFEEQSRVFQN
FDGKRKVIFATNLAETSLTIPGVKYVVDSGLAKESKFEAATGMNVLRVCRISQSSAKQRA
GRAGRTVPGICYRLYTESDFESMSPNQEPEIRRVHLGVAVLRMLALGIKNVQEFDFVDAP
SAKAIDMAIRNLVQLGAITQEGGICELTEEGRYMVKMGIEPRLGKIIISSFHYRLGKEGL
VLAAVMANASSIFCRVGSQDDKHKADCLKVQFCHCSGDLFTVLSVYKEWEALPQDRRNKW
CWENSINAKSMRRCQDTVKELEFCLEKELTVIIPSYWNWNPNKSTVHDKYLKKIILSALA
ENVAMHSGHDRLGYEVALTGQHIQLHPSCSLLVFGEKPNWVVFGELLSISNDYLVCVTAF
DFESLSTLCPPPLFDALEMESRKLQVKVLTSFGSSLLKRFCGKSNSNLQSLVTCIRIACM
DERIGVEVHVDQNEILLFATAEHMQKVSSLVSEALECERKWLHNECMEKFLYPGADFSPM
ALFGAGAEIKYLELEKRCLTVNVFFSNANTIDDKELLMFLEEYTSGTVCSVHKTVGSGQE
GDEKEKWGQITFLSPDSARKAAQLNEVEFKGSKLKVVPSQTIIGGNHKMFSFPAVKAKIF
WPRKVSKGLAIVKCYVHDVDFMICDFSNLEIGGRYVRCSAGRCVDSVVVSGFSKELSEDD
ILRALRNATNRRILDFFIVRGATVENPPLGACEKALLREISPFMPKRNPQTSCCRVQVFP
PELKDAFMKAFITFDGRLHLEAARALEHMEGKVLPGCHSWQKIKCEQMFHSLISCSASIY
VAIKKQLDSLLARFSRVKGAECSLDRNENGSYRVKISANATKTVAELRRPLEELMRGQTI
NHPSLTPTILQHLFSGQGINLMKSIQRETGTYIHFDRRNFNLKIFGPSDKIAPAQQKFIQ
LLLANHESKQLEIHLRGGDLRPDLMKEVVKRFGPDLHGLKEKVPGADLTLSTRHHVISVH
GDKEVKQNVEEIIFEMAQMGYDSAERLDGGDACPICMCEVEDDYRLESCGHLFCRMCLVE
QLESALKNLDSFPICCAHGSCRAPILLTDLRSLLSSDKLEELFRASLGSFVASSGGTYRF
CPSPDCPSVYRVADPLSGGDPFVCGACFAETCTRCHLDYHPYLSCKKYMEFKEDPDLSLK
DWCKGKENVKSCPVCGYTIEKGEGCNHVECKCGGHVCWVCLESYSNSEDCYNHLRSMHGG
IA
NT seq
5229 nt
NT seq
+upstream
nt +downstream
nt
atgagaaagtcatcttttccccccaccactacccggcgcaacccagctccacccccccac
cgccgtcctcccttcaccaccaacaacaacaacaattttcccacaacagggaacgcccgt
aggacttcccctaacttcataatccaccttcacctggaccccacgctcgcaccttccagc
agaagaccagaccccaacactgtaaactctgtaatctctcaatgcaacccaacaccacca
cctgaccatatcataataccgacaaccactaccaccaagacaaaactaactgctcgcttg
cattttcagcaatggtcccacacgctgaattttatgacaaccttatgggaactccgtctt
cggggagcccacagtttcactccaaagctgcagtcatacatcctcttaccttctgataca
gaggagttgagaaggaatttaacgaagaagtttagtgattatcttaaaggactcattaag
ggtgtggatagtaatgttaatgatgatgaaaatgtggttgggagatggcaggcgaaagtg
agtgaaaaaagcgatgagattgcgcagttgatgaagttgcttaaggggagtaatggaatg
aggggttttagtgagttgaatgagaggaaaaaagggttggtggcggaaagggacttgatc
gtgaagagattggaggaatttagggcttccatgaagtgtattttgaagtatattgaagga
ggaagggaggaggaaggggaaaggggtttagaattgtttgtgtttgatggggagattgat
tgggaaaggattcatagattggtttcgagggaaattaggaggttggctgatgggttgcct
atttatgcttataggcagcagattttggagaagattcacggcaaccaggtaatggttttg
gttggggagactggttcggggaagagtacacagttggttcaattccttactgattcagga
atacctggcaaggagtccattgtatgtactcagccacgcaagattgcagccatctcactt
gctgatagagtcaatgaagaaagcagggggtgctatgaaaatagttcagtcatgagttat
ccaacattttcatccgcacagcagtttggttccaaagtcatattcatgactgaccactgt
ttactgcagcactacatgaatgataccactttgtctgggatatcatgcatcattgttgat
gaggctcatgaaagaagcttgaacactgatcttcttttggcaatgattagaggcttgctt
tgtgagagacctgatttaaagctagtgataatgtcagcaacagctgatgcaaagcagctg
tcagattatttttatggttgtgaaatctttcatgttgagggaagaaactttccagtagaa
gtcagatacactccttcctctgagggaactgcttctggtaatgtttctccatatgtatat
gacactttaaggataacgacagagattcataaacaggagagtgaaggcaccattcttgcc
tttttgacttctcagatggaagtagaatgggcttgtgagaaatttgatgatgcctctgct
gttgcattagccttgcatggaaagcttcctttcgaagagcaatctcgtgttttccaaaat
tttgatgggaaaagaaaagttatatttgccactaatctcgcagagacatcacttacaatt
cctggggtcaagtatgtggttgactctggcttggccaaagagagtaagtttgaagcagct
acgggcatgaatgtgcttagagtgtgcaggatcagccagagttctgctaaacagagagct
ggtcgtgctgggagaacggtacctggaatatgctatagactctacacagaatctgacttt
gagtcgatgtctcccaatcaagaacctgagattcgcagagttcatcttggtgttgctgtt
ctgaggatgcttgctttgggaattaagaatgttcaggagtttgattttgttgatgcacct
agcgccaaagcaattgatatggccattaggaatcttgttcagttaggtgccattacacag
gaaggtggcatctgtgaactaactgaggaaggtcgctacatggttaaaatgggcattgag
ccccggctcggtaagatcattatcagcagctttcattatcgcttaggtaaggagggcctt
gttcttgctgctgtaatggcaaatgccagtagcatattttgcagggttggtagtcaggat
gataagcataaggctgattgtcttaaggtgcagttttgccattgcagtggtgacctcttt
actgtgctctctgtgtacaaagagtgggaggctttgcctcaagacaggagaaataaatgg
tgttgggaaaacagcatcaatgccaaatccatgaggagatgccaagacacggtcaaggaa
ttggaattttgccttgaaaaggagctcactgttattattccgtcatattggaattggaat
cctaataagtctaccgtgcatgataaatatttgaaaaagataatactctcagcccttgca
gaaaatgtagccatgcactctggacacgatcgacttggttatgaagtagcattgaccggg
cagcatattcagctgcatccttcatgttcgctgctagtatttggtgaaaaaccaaattgg
gttgtctttggtgaactcctctcaatatctaatgattatttggtttgtgtaactgctttt
gactttgaatcattgtctacactttgcccccctcccttgtttgatgcccttgagatggaa
agccggaagttgcaagtgaaggtgttgaccagttttggcagttccctgctcaaaaggttt
tgtggtaaatctaacagcaatctgcagtctcttgtaacttgcattcggattgcctgtatg
gatgaaaggattggtgttgaagtacatgttgatcagaatgaaattctgttatttgcaaca
gcagagcacatgcagaaggtgtccagccttgtcagtgaagctttggagtgtgagcgaaaa
tggttgcataatgaatgcatggagaaatttttgtatcctggagctgatttttcacccatg
gcactttttggagcaggagctgagattaagtatttggaactagaaaagagatgtttgact
gtcaatgtatttttttctaatgcaaatacaattgatgataaggagcttttgatgtttctt
gaggaatatacatctggtactgtttgttctgttcacaagactgtcggaagtggacaagag
ggtgatgagaaggaaaagtggggccaaataacatttctctctcctgattctgccagaaaa
gctgcccagctgaatgaagttgaattcaaaggctccaagctgaaggtagttccatcacaa
acaatcattggaggcaatcacaaaatgttttcatttcctgctgttaaagcaaaaattttt
tggcctcgtaaagtcagtaaggggcttgccattgtcaaatgttatgttcatgatgttgat
ttcatgatttgtgatttctctaacctggaaattggaggaaggtatgttcggtgttcagct
ggtaggtgtgtggactcggttgttgtcagtggatttagtaaagaactttctgaagatgat
attttacgtgcattgaggaatgccacaaacaggagaatcctagatttcttcatagtaagg
ggagcgactgttgaaaatcctcctttgggtgcttgtgaaaaagcacttttaagagagata
tccccctttatgcctaaaaggaatccccaaactagctgctgcagagtccaagtctttcca
cctgaattaaaggatgcttttatgaaggctttcattacctttgatggaagattgcacttg
gaagcagcaagagctttagagcatatggaagggaaagtattacctgggtgccattcatgg
cagaaaattaagtgcgagcagatgtttcatagtttgatatcctgctcagctagtatctat
gttgcaatcaagaagcaactggattctttgcttgcaaggttcagtcgtgtaaagggtgca
gaatgcagtctcgacaggaatgaaaatggttcctatcgagtgaaaatatctgctaatgct
acaaaaactgttgcagagctaagaagacctctggaagagcttatgagaggacagaccata
aaccatccaagcctcactccaactattctacagcatctgttctctggtcaaggtatcaat
ctgatgaagtcaatacagagagagaccggtacctacattcactttgacaggcgcaacttc
aatcttaagatttttggtccgtcagacaagattgctccagcacagcagaaatttattcaa
ttacttctggccaatcatgaaagcaagcaactcgagatccacctcagaggtggagatctg
cgcccagacttgatgaaggaagtagttaagaggtttgggccagatcttcatggtctcaaa
gagaaggtacctggggcagatcttacacttagcacccgtcaccatgttatctctgttcat
ggtgacaaagaagtaaagcaaaacgtggaagaaataatttttgagatggcgcaaatgggt
tatgattcagctgagaggcttgatggtggagatgcctgccccatttgtatgtgtgaagtt
gaggatgattaccggcttgaaagctgcggacatttgttttgtcgaatgtgcttggtggag
caacttgaatcagcattgaaaaacttggatagtttcccaatatgctgcgcccatgggagc
tgcagggctcccatattgctgacagacttgaggtctctcttgtcgagtgacaagttagag
gaactctttagggcttctttggggtcatttgtagcatcaagtgggggaacctaccggttt
tgcccatctcctgactgcccttcagtttatagagttgctgatcctctctcaggtggtgac
ccatttgtctgcggggcttgttttgcggagacttgtaccaggtgccacttggattatcat
ccatacctctcgtgtaagaaatacatggagttcaaggaagatcctgatttatcactaaag
gactggtgcaaaggaaaagagaatgtgaaaagctgtcctgtctgtggatatacaatcgag
aaaggggaaggttgcaaccatgttgagtgcaagtgcggcgggcatgtctgctgggtctgt
ttagagtcttatagtaacagcgaggactgctataaccatttgaggtcaatgcacgggggc
atagcttga
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integrated database retrieval system
