Populus euphratica (Euphrates poplar): 105132501
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Entry
105132501 CDS
T05872
Name
(RefSeq) general negative regulator of transcription subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
peu
Populus euphratica (Euphrates poplar)
Pathway
peu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
peu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105132501
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
peu03019
]
105132501
Messenger RNA biogenesis [BR:
peu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105132501
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105132501
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
ZapG-like
CDI_toxin_EC869_like
Motif
Other DBs
NCBI-GeneID:
105132501
NCBI-ProteinID:
XP_011034349
UniProt:
A0AAJ6XX62
LinkDB
All DBs
Position
Unknown
AA seq
888 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNVNQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALVDARKTIEKEMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNVVGELESQIDSFEAEIEGLTVKKGKTRPPRLTHLEASITRHKL
HIKKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDDFSDVDDLYNSLPLDKVES
LEDLVTIGPPGLVKGAPVHSLKTSLVTSAPQMPATVASTHHEGAVVQDQADDTTSQDSNS
DIVARTPPAKSSMVGSSAASTPTGNHAPISVNVQAQTLPGLPAASPTLPGSSVLENAAPS
NPSSPATLGNSMKEEEIAGFPGRRSSPSLADAGLARGIGRGGLSSQPSSGIPLSPGVIPS
NGAHGSVPLASDIAKRNILGTDDRIGSAGMVQPLASPLSSRMILPQAGDGTSAVDTSSSG
EAATMGGRVFSPLVTGMQWRPGSSFQNQNEPGQFRARTEIAPDQREKFLQRLQQVQQQGH
SNILGMPPLTGGNHKQYSAQQNPLLQQFNSQSSSVSQASLGLGVQASGFNTVTSAALQQP
NSIHQQSSQQVVMSSAVKDAELGHSTVEEQQLKQNLPEDSTTESALTSGLGKSLVNEDEL
TSPYAMDTSAGASGSLTEPLQVPRDIDLSPGQPLQSSQPSSGLGVIGRRSVSDLGAIGDN
LTGSAVNSGAMHNQLYNLQMLEAAYHKLPQPKDSERARSYIPRHPAATPPSYPQVQLPMA
SNPAFWERLSMHSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEP
KVTTDEYEQGTYVYFDFHVGKDDKQGWCQRIKTEFTFEYNYLEDELIV
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
atgggagcaagccgcaagttacaaggcgagatcgatcgtgttctaaagaaagttcaagaa
ggcgtcgacgtttttgacagtatctggaacaaggtttatgatacggacaacgtgaatcaa
aaagaaaagtttgaggcagacttgaagaaggaaatcaagaaactgcagagatacagggac
cagatcaaaacatggattcaatccagtgaaataaaggataagaaggttagcgcatcttac
gagcaggctctggtggatgctcgtaagactatcgagaaagaaatggaaagatttaagatc
tgcgaaaaggaaactaagacaaaagcattttccaaagaagggctgggccagcaacccaaa
actgatccaaaggagaaggctaaatcagagacaagggattggttgaataatgtggttggg
gaacttgaatctcagattgatagctttgaagctgagattgaggggcttactgttaagaaa
ggaaagacaaggccacccagattgacacatttagaggcatccattacacggcacaagctt
catataaagaagttagagttgatcctgaggctactagacaatgatgagttgagtcctgag
caggttaatgatgttaaagacttcctggatgactatgtggaacgtaatcaggaagatttt
gatgattttagtgatgttgatgatctttacaactcattaccattagacaaggttgaatct
cttgaagacctggttacaattggtcctcctggtcttgtgaagggtgcccctgttcacagc
ttaaagacttccttggtgacatctgctcctcaaatgcctgccactgttgcttctactcat
catgagggtgctgttgttcaagatcaagctgatgatactacttcacaggatagtaattct
gatattgttgcaagaactcctcctgccaaaagtagcatggttggttcttctgctgcatca
acacccactgggaaccatgcacctatttctgtgaatgttcaggctcaaacattgcctggt
ttgccagcagcttcaccaactcttcctggttcaagtgtcttggaaaatgcagctccttct
aatccttcttctcctgcaacacttggcaattctatgaaggaggaagaaattgcaggcttc
cctggccgtcgatcatcaccttctcttgctgatgctggattagcaaggggcattggtaga
ggtggcctctctagccagccctcgtctggtatccccctcagtcctggtgttattcctagc
aacggggctcatggttcagtacctttagcttctgacattgcaaagagaaatattttggga
actgatgatagaattgggagtgctggaatggtgcagcctctggcttccccactaagtagc
cgaatgatcttgcctcaggctggtgatggaaccagtgcagttgatactagtagttctggt
gaagctgctactatgggtggcagagttttctctcctttggtcactggcatgcaatggaga
cctgggagttcctttcaaaatcagaatgaaccgggccaatttcgtgcaagaactgaaata
gctccagatcaaagagagaaatttttgcagcgtcttcagcaagtccagcagcaaggtcac
agtaacattcttggcatgccgcctcttactggtgggaatcataaacagtattctgcccaa
caaaacccccttttgcagcagtttaattctcaaagttcatccgtctctcaagctagttta
ggacttggagtgcaggcatcaggtttcaatactgttacatctgctgctttacagcagcca
aattccatccatcagcagtctagtcagcaagttgtgatgtcaagtgctgtgaaagatgct
gaacttggccattcaacagttgaggagcagcagcttaagcagaatttacctgaggattca
accactgaatctgctcttacatctgggcttggaaaaagtcttgtgaatgaggatgaactc
acatctccatatgcaatggatacttctgctggggcatctggttccttgacagagccttta
caagtgccaagagatattgatctctctccagggcaacccctacaatccagtcaaccatct
agtggcctaggtgttattggccggagaagtgtttcggaccttggtgccattggtgataat
ctcactggatctgctgtaaattctggggcaatgcacaatcagttatacaatttacagatg
cttgaggctgcatatcacaagcttcctcaacctaaagactcagaacgagctaggagctat
attccaaggcacccggcagccacccctcctagctatcctcaagttcagttaccaatggca
agtaaccctgcattctgggaacgtctaagcatgcatagttatggaactgataccttgttc
tttgctttttactatcaacagaatacctatcagcagtatctggctgcgaaagagctaaag
aagcaatcttggagataccacagaaaatacaacacctggtttcaacggcatgaggagcca
aaagttactactgatgaatatgaacaggggacatatgtgtattttgatttccatgttggc
aaagacgacaaacaaggatggtgtcaaagaatcaagacggagttcacttttgagtataac
tatcttgaagatgaactcattgtctag
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