Populus euphratica (Euphrates poplar): 105133564
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Entry
105133564 CDS
T05872
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
peu
Populus euphratica (Euphrates poplar)
Pathway
peu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
peu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105133564
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
peu03019
]
105133564
03036 Chromosome and associated proteins [BR:
peu03036
]
105133564
Enzymes [BR:
peu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105133564
Messenger RNA biogenesis [BR:
peu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
105133564
mRNA degradation factors
5'-3' decay
Decapping complex
105133564
Chromosome and associated proteins [BR:
peu03036
]
Eukaryotic type
Gene silencing
piRNA pathway
105133564
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
TFIIA
Motif
Other DBs
NCBI-GeneID:
105133564
NCBI-ProteinID:
XP_011035912
UniProt:
A0AAJ6UUM4
LinkDB
All DBs
Position
Unknown
AA seq
503 aa
AA seq
DB search
MNNNNRGRYPPGIGAGRGGGMSANPNFQSRVPQQQYVQRHFGQNHHQQQYNQHQQNHNQQ
QQQQQHQHQQQQWLRRNQLAAADSSVDEVEKTVQSEAVDSSSQDWKAKLKIPPADTRYQT
EDVTATKGNDFEDYFLKRELLMGIYEKGFESPSPIQEESIPIALTGSDILARAKNGTGKT
AAFCIPALEKIDQDNNFIQVVILVPTRELALQTSQVCKELGKHLKIQVMATTGGTSLKDD
IMRLYQPVHLLVGTPGRILDLAKKGVCILKDCSMLVLDEADKLLSPEFQPSIEQLIRFLP
SNRQILMFSATFPVTVKDFKDRYLEKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTL
FSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNL
VCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYR
IEQELGTEIKQIPPHIDQAIYCQ
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacaacaatagaggaaggtatccgccaggtatcggcgccggtagaggcggaggt
atgagtgcgaaccctaattttcaatccagggtgccgcaacagcagtacgtgcagagacat
tttgggcagaatcatcatcaacaacaatataatcaacatcaacagaatcacaatcagcaa
cagcaacagcaacagcatcagcatcagcagcagcagtggttgaggaggaatcagctagct
gctgccgattcgagcgttgacgaggtcgaaaagactgttcagtctgaggccgttgactcg
agttcacaagattggaaggcaaagctaaagataccaccagctgacacgcgataccaaacc
gaggatgtgacagccacaaaagggaatgattttgaggattattttctgaagcgtgagttg
cttatgggaatatatgagaagggttttgaaagcccatctcctattcaggaagagagcata
ccaatcgctcttactggcagtgatattctagctagagctaaaaacgggacagggaaaaca
gcagcattttgcattcctgccttggaaaagattgaccaagataacaattttattcaagtt
gtgattcttgtgccaacacgtgagttggctcttcagacatcacaggtttgtaaggagcta
gggaagcatttgaaaattcaagtgatggccaccactggcggtactagtttaaaagatgac
attatgcgtttatatcaaccggtccatttacttgttgggactccaggaagaatactagat
cttgcaaaaaagggcgtgtgcattttgaaagattgttcaatgcttgttttggatgaggcc
gataagcttttgtctccagagtttcaaccttcaatagagcagcttattcgttttcttcct
tcaaatcgtcagattttgatgttttcggccacatttcctgttaccgttaaggattttaaa
gatagatatctagagaagccttatgttatcaatcttatggatgaacttactctcaagggt
attacacaatattatgctttcgttgaagaacgacagaaagtccattgcttgaacactctt
ttctctaagctgcaaataaaccaatcaatcatcttttgcaactcagtgaatcgggtagaa
ttactggccaaaaagatcacagaacttggctattcctgtttctatatccatgcaaagatg
ctgcaagaccatcgtaacagagtatttcatgacttccgcaatggtgcatgcaggaatctt
gtctgcaccgatcttttcaccaggggtatagacatccaagcggtgaatgttgttatcaac
tttgactttcccaagaactcagaaacataccttcacagggttggtcgatcaggaaggttc
ggacaccttggtttagctgtgaatttgatcacatatgaggaccgctttaacttgtatagg
attgagcaggaacttggaactgaaattaaacaaattcctccacatattgaccaggcaata
tattgccaataa
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