Populus euphratica (Euphrates poplar): 105135096
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Entry
105135096 CDS
T05872
Name
(RefSeq) protein PAT1 homolog 1-like isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
peu
Populus euphratica (Euphrates poplar)
Pathway
peu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
peu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105135096
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
peu03019
]
105135096
Messenger RNA biogenesis [BR:
peu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105135096
mRNA degradation factors
5'-3' decay
Decapping complex
105135096
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
105135096
NCBI-ProteinID:
XP_011038109
UniProt:
A0AAJ6Y0Z4
LinkDB
All DBs
Position
Unknown
AA seq
798 aa
AA seq
DB search
MMMDGGNMEQAPKIGDNSTEGAVFDASQYAFFGKDHVEEVELGGLEDDEELPAADFEEEE
FLFDRQEGEVLRSLSDIDDLAITFSKLNKGVNGPRSTGIIGDRGSRESSSAAEWAQGEDF
PNWSDQQLLDQDGVEDGTRWSSQPYSSTARLAESKHLYRTSSYPEQQQQHHHHHHQHYSS
EPILVPKSSYTSNPPLGGQSPQSSPNRSHLNIQYLAGGHQIALPPFSNSHLPLSSLHHGS
PHYGGNLPQFSSGLPANSRPPSQWVNHAGLYPGDHPNRLTNMLQPPLSHQNGIMPPQLIP
QLQPQQHRLHPPVHSSSGHLLGMQSQVFNPHLSLSPPMTNNFDTMLGLTDRDQRPKSVQK
VRPMVRYPQQGFDVNGQKFDIGLPQFRSKYMTTDEIETILRMQLAATQSNDPYMDDYYHQ
ACLSKKTAGAKLRHHFCPIHLRDLPPRARANAEPHAFLQVDALGRIPFSSIRRPRPLLEV
EPPNSTGGGNTEQNAAEKPLEQEPMLAARVTIEDGLCLLLDVDDIDRFLEFNQFHEVGTQ
LRRRRQALLEGLAASMQLVDPLGKNGHTVGLAPKDDFVFLCLVSLPKGRKLLARYLQLIF
LGGNLMRIVCMAIFRHLRFLFGGLLFDNGVAETTNELARAVSSCVRRMDLCSLSACLAAV
VCSSEQPPLRPLGSSAGNGASLILLSVLERATELLNDLHDSSDYNVTNGALWKASFDEFF
SLLIKYCINKYDGIMQSSLSDSDPAESIKRELPMELLRAIVPLTNDYQKKLLYDLSQRSL
VGQDDGNGGDINSEVVPS
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atgatgatggatgggggtaatatggaacaagctcccaagattggagataactccacagaa
ggtgctgtatttgatgcatctcaatatgcattctttggtaaagatcatgttgaggaagtt
gagttaggtgggttggaggatgacgaggagttgcctgctgctgattttgaagaggaagag
tttctctttgatagacaagagggtgaggttttacgatctctatctgacattgatgatctt
gcaattacattttcaaagttgaacaagggtgtcaatggaccgagaagcactgggataatt
ggtgataggggctccagagaaagttcatctgctgctgaatgggcacagggagaggatttt
ccaaattggtctgaccagcagctacttgaccaagatggcgttgaagatggcacaagatgg
tcgtcgcagccatattcttctactgctcgccttgcagaatcaaagcatctataccgaact
tcttcataccctgagcagcagcagcagcaccaccaccaccaccaccaacactactctagt
gaacctattcttgtgccaaaatcttcttacacttcaaatcctcccctgggcggccaatct
ccacagtcctcaccaaaccgcagtcatctaaatattcaatatcttgctggtggccaccaa
atagcattaccccccttctctaattcccatcttccattgagcagcttacatcatggatca
ccacattacggtgggaatttgcctcaattcagttctggtcttcctgctaatagccggcca
cctagccaatgggtcaaccatgcaggcttatatcctggagatcatcccaaccgcttgacc
aatatgttgcaaccgccattatctcatcagaatgggatcatgcctccacagttgatccca
caacttcagccacaacagcataggttgcaccccccagttcattcatcatcgggccattta
ttgggcatgcaatctcaagtgttcaatcctcatctctctttatcccctccaatgacgaac
aactttgacacaatgcttggtctgaccgatagagatcaaagaccaaaatcagttcagaaa
gttagaccaatggtgcgttatcctcaacaaggctttgatgtcaatggtcagaagtttgat
attggcttgcctcaattcagatccaagtatatgactactgatgaaattgaaactattctc
agaatgcagctagctgcaacacagagtaatgacccatacatggatgattattatcaccag
gcttgcctttcaaaaaaaacagctggggcaaagctcagacatcatttctgcccaattcac
ttgagggatcttcctccccgagcacgagctaatgctgagccgcatgcttttctccaggtc
gatgctcttgggagaattccgttctcttcgattcgcaggcctcgtcctcttcttgaagtt
gaacctccaaattctactggtggtggtaatactgagcagaatgctgctgagaagccccta
gaacaggagccaatgcttgcagctagagtcacaattgaagatggtctttgccttcttctt
gatgtagatgatattgatcgttttctagaattcaatcagttccatgaggttggaacccag
ttgagacgcaggaggcaggccttgttggaagggctggcagcttccatgcaattggttgac
cctctcggcaagaatggccacacagttggacttgctcccaaggatgattttgtgttcttg
tgtttagtatctcttcccaagggacggaagctccttgcaaggtaccttcaacttattttt
ctgggtggcaatctcatgcggattgtctgcatggccatttttcgtcatttaaggtttttg
tttggaggtctcctgtttgataatggagttgcagaaaccacaaatgaacttgcaagggct
gtatcatcatgtgttcgtcgcatggatctttgttccctcagtgcctgtcttgctgcagtg
gtttgctcctcagagcagccgccccttcgcccccttggaagctcagctggaaatggggct
tccctcatattattgtctgtgttggagagagcaactgaactattaaatgatcttcatgat
tctagcgactacaatgtgactaatggggcactttggaaggcctcatttgatgagtttttt
agcctgcttattaaatattgcataaataaatacgatggtattatgcagtcttctctgtca
gattcagatccagctgaatctattaagagggaactacctatggagctcttgcgtgcaatt
gttcccctcactaatgactaccagaaaaagctgttatatgatctttcccagcgttcctta
gttggtcaggatgatggtaatggtggtgacatcaattctgaagtggtaccaagttaa
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