Populus euphratica (Euphrates poplar): 105135422
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Entry
105135422 CDS
T05872
Name
(RefSeq) uncharacterized protein LOC105135422
KO
K07573
exosome complex component CSL4
Organism
peu
Populus euphratica (Euphrates poplar)
Pathway
peu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
peu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105135422
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
peu03019
]
105135422
Messenger RNA biogenesis [BR:
peu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
105135422
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
105135422
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ammonium_transp
EXOSC1
ECR1_N
DUF3082
RRP4_S1
Motif
Other DBs
NCBI-GeneID:
105135422
NCBI-ProteinID:
XP_011038587
UniProt:
A0AAJ6UYN7
LinkDB
All DBs
Position
Unknown
AA seq
1148 aa
AA seq
DB search
MQEEGEMVTPGEVLGKATELKAGKGAYIGSYRDTDIQYLFSSLTGIRRTLSPSPDSPDQR
PTVEVTGHKAHGAVPEPGSVVIARVTKVMAKTASADIMCVGPKSVQEKFTGIIRQQDVRA
TEIDKVDMHLSFRPGDIVRALVLSLGDARAYYLSTAKNELGVVSAESAAGATMVPISWTE
MQCPLTGQIEQRKVAKVGSWYSYQKKKKTSFCLDRMKEGIRQYSVEKGTEEVINKANRLN
MKGKMRLMLLLAAKAKEMHPLLESKFGTICSILFSKGTCKFYYPARWCLRWQMNATDFVE
WYVSDDEIIDTQCQSLTSSSFSVAADTFITELNTMPCLPVLLQPLPALSSSSPTLLFLQN
PHHVPSVTSLKKPKKILRSKPLKIPPFALTESSDSPQSIDPSPQPLLQELSDCFDLPPDY
FQQLPSDLRLDLNDAAFDLSNGPVLDECGKELGELLLNLSRAWELGDTSTSQALASNLPM
LESSLTNNAKSAFGKRLVSAGRRFQSMGQYGQGELQKIAQTMITTGKLLSASSIPMETDE
ELKKETKVFKFGELQVEITPQKANIGAVIGLIFGIVSWELAQGIQSIPESSLEYANDNAL
LLAKSLRGALLALCYSSAFLSACTTVALFLLAISLSLPSSNMACSASDLAPLLSTTVNST
EAATYLCSQFSSIANQLSDTTYAVNNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIM
LTNVLDAAAGGLSYYLFGYAFSFGSPSNGFIGRHFFGLREFPSSQADYSFFLYQWAFAIA
AAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSGDGWASPVKSDNNLLFGSGAI
DFAGSGVVHMVGGIAGFWGALIEGPRIGRFDRSGRSVALRGHSASLVVLGSFLLWFGWYG
FNPGSFLTILKSYGDSGGYYGQWSAVGRTAVTTTLAGCTAALTTLFGKRLLVGHWNVLDV
CNGLLGGFAAITAGCSVVEPWAAIICGFVASWVLIVCNKLAEKLKYDDPLEAAQLHGGCG
TWGLLFTGLFAKEAFVNEVYPNKAGRPYGLLMGGGRKLLAAQIIQILVISGWVTMTMGPL
FYGLKKLNLLRISSEDEMAGMDLTRHGGFAYIYHDDDDQSGKPSSFMMRRVEPAGENTPR
RNLSPISA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaagaaggagagatggtgacaccaggagaagtattaggcaaagcaacagaacta
aaagcaggaaaaggagcctacataggatcatatcgcgacactgatatacaatacctcttc
tcttctctcactggtatccgccgcactctatctccttctcctgactctcctgaccagaga
ccaactgttgaagtaactggacacaaggcccatggtgctgttccggagcctggatctgtt
gtcattgccagagttactaaagtgatggcaaaaacagcttcggctgatataatgtgtgtt
ggtcctaagtctgtgcaagagaagtttactggcataattagacaacaagatgtaagagca
actgagattgacaaagtggatatgcatttatcatttcggcctggtgacattgtcagagct
cttgttctatcacttggagatgcacgagcttattatctttcaactgcgaagaatgaatta
ggtgttgtgtctgcagagagcgcagctggtgcaacaatggttcccataagttggacagag
atgcaatgcccattgacaggccaaattgagcaaagaaaagtcgccaaggttggaagttgg
tacagttaccaaaagaagaagaaaacaagcttctgcttagaccgcatgaaggaaggaatc
aggcagtattctgtggagaaaggaacagaagaagtaataaacaaggcaaacaggttgaac
atgaaaggtaaaatgcgtctcatgcttctcttagctgccaaagcaaaggagatgcatccc
ttgcttgaaagcaaatttggcacaatttgctccattcttttctctaagggaacttgcaag
ttttattaccccgctagatggtgtttgagatggcaaatgaatgcaactgattttgtcgaa
tggtatgtttcagacgatgaaatcattgacacacagtgtcagtccttaacaagctcgagt
ttttcggttgctgctgacacatttataactgaactaaacacaatgccttgtcttcccgtc
ctccttcaaccactgccagctctctcttcttcctctcctacccttctctttctccaaaat
ccacaccacgtcccttctgtaacctctcttaaaaaacccaaaaagattctccgctcaaaa
cctcttaaaatcccaccttttgccctgacagaatcatcagactctcctcaatctattgac
ccttctccacaacccctccttcaagagctctctgactgctttgatcttccgccagattat
ttccaacaattaccgagtgatcttcgattagatttaaatgatgcagcttttgatctttcg
aatggaccagttcttgatgagtgcggtaaagagctgggagaactcttgttaaatctctct
agagcatgggagctgggtgacacatctacttcccaagctttagcgagcaatttgcctatg
ctggagagctctttaacaaacaatgctaaatcagcatttggcaaacgtttggtatctgct
ggaaggaggttccaatccatgggacagtatggtcagggtgagctgcagaaaattgcacaa
acaatgattacaacgggaaagcttctttctgcaagttcaataccaatggaaactgatgag
gaattgaagaaagaaacaaaagtcttcaagtttggagaactacaggttgaaataacacca
cagaaagctaatattggggctgtcattggacttatatttgggattgtttcatgggaacta
gctcaaggcatccaaagcattccagaaagttcattggagtatgcaaacgacaatgcttta
cttctggctaagtctctaagaggagctctacttgccctttgctactcatcagcctttctg
tctgcttgtaccactgtggcacttttcttacttgcaatctctctctctctcccctcttcc
aacatggcctgctcagcctcagacctagcacctctcctctccaccactgtgaactccaca
gaagctgccacctacttatgctcccagttcagcagcatagccaaccagctctcagacaca
acctatgcagtcaacaacacttatctccttttctctgcctacctggtctttgctatgcaa
cttggctttgccatgctttgtgctggctctgtgagggccaagaacaccatgaatataatg
ctcactaatgttcttgatgctgctgccggtggcctttcttactatctctttggatatgcc
ttttccttcggctcccctagcaatggcttcattggccgccatttctttggtttgagagag
tttccttcttctcaagccgactatagtttcttcctttatcaatgggcttttgctatagct
gctgctggcatcactagtggctccatcgctgagagaacccaattcgttgcttacctcata
tactcctcctttttaactggctttgtttacccagttgtttctcattggttttggtccggt
gatggttgggccagtccggttaaatctgataataatctcctattcggttcgggtgctatt
gactttgccggttcaggtgtggttcacatggttggaggaatagctggtttctggggtgct
ctcatcgaaggcccacgtattggccggtttgacaggagcggtcggtccgtggcattacgc
ggtcatagcgcttcactcgtggtgcttggttcgtttttgctgtggttcgggtggtacggg
ttcaaccccggttcgtttttgacaattttgaagagttatggcgatagtggcgggtattac
ggccagtggagcgctgtaggaaggacagctgtcactacaacactggccgggtgcacagca
gcccttactaccttgtttggcaaaagactattagttggccattggaatgtccttgatgtt
tgcaatggtttattgggaggttttgctgcaatcaccgcagggtgttcagtggtagaacca
tgggctgcaatcatctgtggctttgttgcatcttgggttttaattgtgtgtaataagctg
gcagagaaattaaagtatgacgaccccttagaggcggcccaattgcacggcggatgtggc
acgtgggggttgctgttcaccgggttgttcgcgaaggaggcgtttgtgaatgaggtgtat
ccaaacaaggcagggcggccatatgggctattaatgggtggtggtaggaagctattggca
gcccagattatccagatcctggtgatatcagggtgggtcacgatgacaatggggccattg
ttctacgggctaaagaagctgaatttattaaggatctcaagtgaggatgagatggcaggc
atggatctgacaaggcatggtgggtttgcctatatataccatgatgatgatgatcaatca
gggaagccatcttcttttatgatgagaagagttgagcctgctggtgaaaacacacctcgt
cgaaacttatcacccattagcgcgtga
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