Populus euphratica (Euphrates poplar): 105135518
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Entry
105135518 CDS
T05872
Name
(RefSeq) ATP-dependent RNA helicase DHX36 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
peu
Populus euphratica (Euphrates poplar)
Pathway
peu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
peu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105135518
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
peu03019
]
105135518
03012 Translation factors [BR:
peu03012
]
105135518
Enzymes [BR:
peu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105135518
Messenger RNA biogenesis [BR:
peu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
105135518
Translation factors [BR:
peu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
105135518
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
T2SSE
Dicer_dimer
ATPase
ResIII
AAA_14
AAA_11
NPHP3_N
NACHT
Viral_helicase1
PhoH
Rad17
Motif
Other DBs
NCBI-GeneID:
105135518
NCBI-ProteinID:
XP_011038720
UniProt:
A0AAJ6V188
LinkDB
All DBs
Position
Unknown
AA seq
1210 aa
AA seq
DB search
MLSSLLHSPPWQIPQTVKPSTPVSSTAMKDRSPPSSFGAVYVPPHCRIRSLVSTPYCHSS
SNASSPSPPIGSKFRENHSESTTVLNPRNRPPLHQQQRNGVADNNDFNSNKKPAPKFISA
YDDRGSEEGSDLETDCPVVQPGACLSDDIEEWKRKLTVLLHDKEKQELISREKKDRRDFE
QIAALASKMGLHSHSYAKVVVFSKAPLPNYRFDLDDKRPQREVNLPLGLLQRVDAYLGDY
LYQRSRINSNFPDTFSRSSSSSLSTDDGLFEQPEPLASSKAVMEKILWRRSMQLCDQQQA
WQESPEGCKMLEFRKTLPAYKEKDAILAAISQNQIVIISGATGCGKTTQIPQFILESEVE
SVRGAVCNIICTQPRRISAMSVSERIASERGEKLGECVGYKVRLEGVKGKDTHLLFCTTG
ILLRRLLVDRSLKGITHVIVDEIHERGMNEDFLLIVLKDLLPHRPELKLILMSATLDAEL
FSSYFDGAPILRIPGFTYPVRTHFLENILEMTGYRLTQCNQIDGYGQEKMWRIGKQAPRK
RKSQIASSVEEALRTADFKEYSSQTRESLSCWNPDSIGFNLVEYLLCNICENERPGAVLV
FMTGWDDISSLKDKLQAHPFLGDPSRVLLLTCHGSMASSEQRLIFDEPEEGVRKIVLATN
IAETSITINDIVFVLDCGKAKESSYDALNNTPCLLPSWISKVSAQQRRGRAGRVQPGECY
HLYPRCVYDAFAEYQLPEILRTPLQSICLQIKSLKLGSISDFLSRALQSPELLAVQNAIE
YLKIIGALDQNENLTVLGRYLTMLPVEPKLGKMLVLGAIMNCLDPILTVVAGLSVRDPFL
MPLDKKDLAEAAKYQFSGDYSDHLALVRAYEGWKDAERDLSGYEYCWKNFLSVQSMKAID
SLRKEFFSLLMDTGLVDGNPTTCNAWSHDEHLVRAVICSGLYPGISSIVHNEKSFSLKTM
EDGQVLLHSNSINARESKIPYPWLVFNEKIKVNSVFLRDSTAVSDSVLLLFGGSISRGDA
DGHLKMLGGFLEFYMQPSVAEMYQSLRRELDELIQTKLLNPRMDIHMHHELLTAVRLLVS
EDNCDGRFVFGCRFFKSSKPTVFTTQPTLISRSDSGPGGDNSKSQLQTLLTRAGYAAPSY
KTKQLKNNQFRATVEFNGMQIMGQPCNNKKSAEKDAAAEALQWLVGGTQTNQEYINHMSM
LLKKSKKDHY
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
atgctatcttctctccttcattcacctccctggcaaattccccaaaccgtaaaaccctcg
acacctgtctcctccacagcaatgaaggaccggtcgccgccttcctcattcggcgccgtt
tacgtccctccacactgccgtatccgctcccttgtctccactccctactgtcactcctcc
tcaaatgcttcttctccttctcctccaattggctccaaatttcgcgaaaatcacagcgag
agcactactgttttaaaccctagaaatcgtcctcctcttcatcaacaacagagaaacggc
gtcgctgataataatgattttaacagtaataagaaaccggcaccgaaatttatttctgcc
tacgatgaccgaggatcagaggaaggctctgatcttgaaacggactgccccgtggttcaa
cctggtgcttgcctttctgatgacatcgaggagtggaaacggaaattaacagtgcttttg
catgacaaggagaagcaagagttgatttcaagagagaaaaaggaccggcgtgattttgag
caaatagctgctcttgcgagtaaaatgggcttgcacagccattcctatgcgaaagtagtt
gtttttagcaaggctccgcttccaaactacagatttgatttggatgacaagcgtccgcag
agggaggtgaacttacctcttggtttgctacaaagagttgatgcttatcttggagactac
ctctatcaaaggtccaggattaatagtaattttccagatacattttctagatcaagcagc
agtagtctctccacagatgatgggctttttgagcaacctgagccactggcatccagtaag
gctgttatggagaaaattctgtggcggagaagtatgcaattgtgtgatcagcaacaagct
tggcaggaatctccagaaggctgcaagatgcttgaatttcgtaaaactcttcctgcttac
aaagagaaggatgccatattggcagccatttcacagaatcagattgttataatctctggt
gcaactggctgtggcaaaaccacgcaaattccacaattcattttagaatctgaggtagaa
tctgttcgtggagctgtttgtaatattatatgtacacagccaagacgaatatctgctatg
tctgtttctgaaagaattgcttcagagagaggggagaaattgggtgaatgtgtcggatac
aaggttcggcttgagggtgtaaagggaaaggatacccaccttctcttctgtaccactggc
atcctgttgagaagactgcttgttgatagaagtttaaaaggaataactcatgtgattgtg
gatgagattcatgaacgtggaatgaatgaggattttctgctcattgtcctcaaggatctc
cttcctcatcggccagaactgaagctgattctgatgagtgcaacccttgatgccgagctg
ttctcgtcatattttgatggagctccaatactacgcattccaggttttacatacccggta
cgaactcattttctggaaaatattctggaaatgacgggttacagattgacccaatgcaac
caaattgatggttatggtcaggaaaagatgtggaggataggcaaacaagctccgagaaaa
aggaagagtcaaattgcttcaagtgttgaggaagctcttagaacagctgattttaaggag
tacagtagccagactcgggagtctttgtcatgttggaatcctgatagcataggttttaat
cttgttgaatatctcttatgtaatatttgtgagaatgagaggccaggtgctgttcttgtt
ttcatgacggggtgggatgacataagttctttgaaggataagcttcaagctcatcctttc
ttaggagatccaagccgagttttgttgctcacttgccatggttctatggccagctcagag
cagaggttaatatttgatgagcctgaagagggtgtgcggaaaatagtactggctactaat
attgctgagacaagtatcactatcaatgatattgtttttgttcttgactgtgggaaagca
aaggagtcttcctatgatgcattgaataacactccttgtctgcttccttcctggatttct
aaggtttctgctcaacaaagaagaggaagagctggccgagttcaaccaggagaatgttat
cacctctatcctaggtgtgtatatgatgcttttgcagagtaccaattgccagaaattttg
agaacgcctttgcagtctatttgtctacaaatcaaaagtctgaaacttggaagcatatct
gactttctatcgagggctttgcagtcgcctgagttattagcggttcaaaatgccattgaa
tatttaaaaatcatcggagccttggatcagaatgaaaacttgactgttcttggtcgatat
ttgactatgcttccagtggagcctaagcttggaaaaatgctcgttttaggtgctattatg
aattgcctggatccaatactaactgttgttgcaggtcttagtgtcagagatcctttcttg
atgccattggacaagaaggatcttgcagaggctgcaaaatatcagttttccggtgattat
agtgaccacctagcacttgtccgagcctatgagggctggaaagatgctgaaagagatctt
tctggatatgagtactgctggaaaaattttctctcagtgcaatctatgaaagctattgat
tctcttcggaaggagttcttctccttgctcatggataccggccttgtcgatggcaaccca
accacctgcaatgcatggagccacgacgagcatctggttcgagcagttatttgcagtggc
ctctatcctggaattagctccattgtgcacaatgagaagtcattttcactgaaaaccatg
gaggatggccaggtgcttctgcactctaactcgattaatgctcgagaatcaaaaatcccc
tatccatggctggttttcaatgagaagataaaagttaacagtgtttttctccgggattca
actgctgtttctgattcagtgctgcttctatttggcgggagcatctctagaggggatgct
gatgggcacttgaaaatgttgggaggatttctggaattctacatgcaaccttctgtagca
gaaatgtatcagagcttgaggagagagctcgatgagctgattcagaccaaactgctgaat
cccaggatggacatacacatgcaccatgagcttctcactgcagtgcgattgttagtttca
gaggataattgtgatggcagatttgtgttcggttgccgtttcttcaagtcctcaaaacca
actgtttttactacacagccaaccttaatttcaaggagtgatagtggacctggaggtgat
aattccaagagtcagctccagacattgctcacccgggcaggatatgctgcaccatcctac
aagacaaagcaattgaagaacaaccaatttcgcgccactgttgagttcaatggaatgcaa
attatgggacagccttgcaacaacaagaagagtgcagaaaaagatgcagcagctgaagcc
ctgcagtggctggtgggtgggacccaaacaaaccaggaatacattaatcacatgtcaatg
ttgctaaagaagagcaaaaaggatcattactaa
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integrated database retrieval system
