Populus euphratica (Euphrates poplar): 105136165
Help
Entry
105136165 CDS
T05872
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
peu
Populus euphratica (Euphrates poplar)
Pathway
peu03013
Nucleocytoplasmic transport
peu03015
mRNA surveillance pathway
peu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
peu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105136165
09122 Translation
03013 Nucleocytoplasmic transport
105136165
03015 mRNA surveillance pathway
105136165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
peu03019
]
105136165
03041 Spliceosome [BR:
peu03041
]
105136165
Enzymes [BR:
peu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105136165
Messenger RNA biogenesis [BR:
peu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
105136165
Spliceosome [BR:
peu03041
]
Complex C
Other components
EJC/TREX
105136165
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
105136165
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
YihI
Motif
Other DBs
NCBI-GeneID:
105136165
NCBI-ProteinID:
XP_011039701
UniProt:
A0AAJ6Y2B2
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MGETRDNDTYEEELLDYEEEDEKAPDSVGAKVNGEAVKKGYVGIHSSGFRDFLLKPELLR
SIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPTSGQVIALV
LCHTRELAYQICHEFERFSTYLPDTKVAVFYGGVNIKTHKDLLKNECPHIVVGTPGRILA
LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLTELEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLVECNFPSICIHSGMSQEERLMRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaacaagagacaacgacacttacgaggaggagcttctagattatgaagaagaa
gacgagaaagcacctgactccgtcggcgctaaagttaacggcgaagccgttaaaaaagga
tatgtagggattcacagttcgggattcagagatttccttttgaagccagagcttcttcgt
tctattgtcgactctggttttgagcatccttctgaagtgcaacatgagtgtatccctcaa
gccatcttggggatggatgtcatctgccaagctaaatctggaatgggaaaaactgctgtt
tttgttctttctactcttcagcaaattgagcctacctctggacaagttattgcccttgtt
ctatgtcacactagagagttggcttaccagatctgccacgagtttgagaggttcagtaca
tacttgcctgacaccaaggttgctgttttctatggtggtgtcaatatcaaaactcacaag
gatctactgaaaaatgaatgccctcatattgttgttggaacacctggaagaatcctagca
cttgctagagataaggacctttctttgaagaacgtcagacattttatccttgatgaatgt
gacaaaatgcttgaatcactcgacatgaggagagatgttcaggagattttcaagatgacg
cctcatgataagcaggttatgatgttttctgcgacgctcagcaaagaaatccgcccagtt
tgcaagaaatttatgcaagatccgatggaaatttatgtcgatgatgaagccaagttgacc
ctccatggtcttgtgcagcactacatcaaactgactgagctggagaaaaacagaaagtta
aacgatcttcttgatgcactggacttcaatcaggttgttatctttgttaaaagtgtgagc
agagcagctgagctgaacaagctactcgtggagtgtaatttcccgtccatttgcatacat
tctggcatgtcacaggaagaaaggttgatgcgctacaagggtttcaaggagggtcataaa
aggattcttgttgccactgacttggttggcaggggtattgatattgaacgtgtcaacatt
gtcattaactatgacatgccagactcagctgacacttacttgcacagggttggtagagct
ggcaggtttggcacaaaaggccttgcaattacttttgtatcatcagcttcggattctgat
gttctcaaccaggttcaagagaggtttgaggtggatataaaggagcttcctgagcaaatt
gatacttctacatatatgccatcttaa
DBGET
integrated database retrieval system
