Populus euphratica (Euphrates poplar): 105136448
Help
Entry
105136448 CDS
T05872
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
peu
Populus euphratica (Euphrates poplar)
Pathway
peu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
peu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105136448
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
peu03019
]
105136448
Messenger RNA biogenesis [BR:
peu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105136448
mRNA degradation factors
5'-3' decay
Decapping complex
105136448
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40
WD40_Prp19
Beta-prop_HPS5
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Beta-prop_Vps41
Beta-prop_CAF1B_HIR1
COG2_C
Motif
Other DBs
NCBI-GeneID:
105136448
NCBI-ProteinID:
XP_011040104
UniProt:
A0AAJ6V2J1
LinkDB
All DBs
Position
Unknown
AA seq
1567 aa
AA seq
DB search
MASPGNPNQQQQGGGGIIGGGGGFDLNKLFKPSSSNPMNMMQPHIQQQQQQGPSPSPSSN
TTTSGNLTTSPSFPLPSSPPPYLTPSSSYPPPTGPYHPFHHPHYLSPYPPPPPPQQLHNQ
FLTNTNIHLQNRPQPISSFAPSPPPLSPNNSGGAVLMDILTNQNQQQPPLSTNLSGPFPS
STPSTAFITTSPPVPSAPPVSLASPTQQCCAPPARMLSTKLPKGRHLNGNHVVYDIDVRL
QGEVQPQLEVTPITKYLSDPGLVLGRQIAVNRNYICYGLKPGAIRILNINTALRSLLRGH
NQKVTDMAFFAEDVHLLASACVDGRVFIRKINEGSDEEEKPQIFERILLALHIIADGESF
HPRVCWHPHKQEILIVAIGNLILKIDTIKIGKGGAFSVEQPLTCPIEKLIDGVQLVGKHD
GEVTELSMCQWMTTRLASASTDGVVKIWEDRKAVPLAVFRPHDGNPVNSVAFLTAPDRPD
HIVLITGGPLNQEVKIWASASEEGWLLPSDAESWLCTQTLTLKSSAESSAEDAFFNQVVA
LPRASLFLLANAKKNAIYAVHLEYGPYPAATRMDYIAEFTVTMPILSLTGTSDCLPNGEN
IVQVYCVQTQAIQQYALNLSQCLPPPLENMVLEKTESNVSRAFDTANSDGSAIMESSHGS
KPIEISTGNMTSIPPMTPSSSESAPVASHPESLGSSDVGSSLDIASSSGQTKAITVSSRN
NTDNTNTVSPHLLLSPKLSRSLSGLQSPANITDPNVQLSGHAGDQPVPDHSVDRRIETVK
ENINDTSTGDNLNKGEKNIEQTGIAMVSEPPVMFKHPTHLITPSEILSRGAASENSQTAQ
GLNVGEAKIQDVLVNNDTENVEVEVKVVEETPGSGTVPISSSKEKPARLTISKSTSTRLK
KKREEFLLKADLAGTTYLHGAYKGPEEKKENIISSEATESTSPILKQTSADALQVDSVAS
EKNKGEPDDWEDAADMSPPKLDGDGELSRGESGTNQNNDFDLPRESHTPVAEKKEKPFYS
QASDLGIQMARDCHVEAYSVGAIRQANEGSITELLDRNPSGVDEEQHVTEDVPAKSGEAE
ISVAVPQSPAPATKGKKQKGKSSQVSVPSSPSPSPSPFNSTGSSNEPGCTSGAQSSDAAL
PQIMALQDTLDQLLNMQKEMQKQMNTMISVPVSKEGKRLEASLGRSIEKIIRANTDSLWA
RFQEENTKHEKLEKDRIQQLTNLITNCINKDLPTALEKTLKKEIAAIGPAVARAITPILE
KSISSAITESFQKGVGEKAVNQLEKTVSSKLEATVARQIQSQFQTSGKQALQDALRSTLE
ASIIPAFEMSCKAMFDQVDATFQNGLNKHINDIQQQFNSMHSPVAIALRDAINSASSLTQ
TLSGELADGQRQLLALAAAGANSKVGDPSTKLGNGPLPGMHEMPEVPLDPTKELSRLIAE
QKYEEAFTLALHRSDVSIVSWLCSQVDLQGILSISPLPLSQGVLLALLQQLACDFSNETS
RKLAWMTDVAAAINPTDPMIAMHVGPIFDQVYQIVVHQRSLPSTSASEASGIRVLLVVIN
SVLRSCK
NT seq
4704 nt
NT seq
+upstream
nt +downstream
nt
atggcttcacctggtaatccaaatcaacaacaacaaggaggtgggggaataataggggga
ggaggaggttttgatctgaataaactgttcaagccctcttcttcaaatcctatgaatatg
atgcagccccatatccaacagcagcagcagcaaggtccttctccatctcccagtagtaac
actaccacaagtggcaatctcactacctctccttccttccctctcccttcctctcctcca
ccttatctaactccatcttcttcttatccacctcctactggtccttaccacccttttcac
caccctcactatctctccccttacccacctccacctcctcctcagcaacttcacaatcag
ttcctcacaaatactaatatccatctccaaaatagaccacaacccatctcttcctttgca
ccctctcctcctccactctcacctaataattcaggtggtgctgttttgatggacatcttg
accaatcaaaaccaacagcagcctccgctatccactaatcttagtggacctttcccttct
tccactccctcaactgcattcatcaccaccagtcctcctgtcccatctgctcctcctgtt
agtttagcatctccaacgcagcaatgttgtgctccccctgcgaggatgctcagtaccaag
ctccctaagggtcgacacctgaatggcaaccatgtcgtgtatgatattgatgtgagattg
caaggtgaggtgcaacctcaacttgaagtcacacccatcaccaaatatttatccgatcct
ggccttgttctcggccgtcagattgctgttaatagaaattacatttgctatggactcaag
cctggtgctattcgtatcctcaatattaatactgctttgagatcattgcttcgtggacat
aaccagaaagtaacagacatggctttctttgctgaggatgttcaccttttggccagtgca
tgtgttgatgggcgtgttttcataaggaagatcaatgagggctcagatgaggaagaaaaa
cctcaaatttttgaaaggatactccttgcccttcacataatagcagatggagaatcattc
catccacgagtgtgctggcatccacacaagcaagaaattttgattgttgcaattggaaat
ctcatcttgaaaattgataccattaagattggaaaaggtggagcattttcagtggagcaa
cctcttacttgtcccattgagaagttgattgatggggtccagcttgttggtaaacatgat
ggggaagtcactgagttgtccatgtgtcaatggatgaccacccgtttagcttcagcttca
acagatggcgtggtcaagatttgggaagaccgtaaggcagtaccccttgcagtattcaga
ccacatgatggcaatcctgtaaattctgtggcattcctgaccgcccctgaccgccctgat
catattgttcttatcactgggggccccctcaatcaggaagtgaagatatgggcctccgct
agtgaagagggctggttattacctagtgatgctgaatcatggctgtgcactcagaccttg
accttaaagagttcagctgaatctagtgctgaggatgcattttttaatcaagttgtagcc
ctaccccgagccagcctgtttcttcttgcaaatgccaagaagaatgccatatatgctgta
cacttggaatatgggccttatcctgctgcaacccgcatggattacatagctgagtttaca
gttacaatgcctattttgagtcttactggaaccagtgattgtttaccaaatggagaaaat
attgttcaggtttactgtgtccaaacacaggctattcagcaatatgcattgaacttgtca
caatgccttccaccacctctggagaacatggttttggagaaaacagaatctaatgtttct
cgtgcttttgatactgctaattctgatggttctgctattatggaatcatctcatggaagt
aaacccattgagatatccacaggtaacatgacttccataccaccaatgactcctagcagt
tctgaaagtgctcctgtagcaagccatccagaaagcttgggttcttctgatgttggtagc
tcgctagatattgcttcttccagtgggcaaaccaaggctattactgtttcatcacgcaat
aatactgacaatactaacactgtgtcaccccatctactgttaagtccaaagttgtcccgg
tcgttgtcaggtctccagagtccagcaaatatcacagatcccaatgtgcaactcagtggt
catgctggtgaccagcctgttccagatcattcagttgaccgaagaattgaaactgtgaaa
gaaaatattaatgatacctccactggtgataatttgaataaaggtgagaagaacatcgaa
caaactggtattgcaatggtctctgaacctccagtaatgtttaaacacccaacccatctt
ataactccatcggagatattatctaggggtgctgcttctgagaattctcaaactgctcag
ggtctgaatgttggagaggcaaagattcaggatgtgcttgtgaacaatgatactgaaaat
gttgaagtagaggttaaagttgttgaagaaacacctggcagtggaacagtcccaatatct
agttccaaagaaaaacctgctaggcttactatatcaaagagtacctctactagattgaag
aagaagagagaagaatttcttctgaaagcagatcttgctgggactacttatcttcatggg
gcatataaaggccctgaggaaaagaaagaaaatatcatatcttctgaagccacagaaagc
accagccctatcctgaaacagacatctgctgatgccttgcaggttgactctgtagcaagt
gagaaaaataaaggcgagccagatgattgggaagatgctgctgacatgtctccaccaaaa
ctggatggtgatggggaactatcacggggagagtcaggaaccaatcaaaataatgacttt
gacttgcccagagaatctcatacacctgttgctgagaagaaggaaaaacccttctactct
caggcctcggatcttggcattcagatggctagagattgtcatgtggaagcttatagtgtt
ggggcaatcagacaagctaatgaaggtagcattactgagttacttgatagaaatcctagt
ggtgtagatgaggagcaacatgtaactgaagatgttcctgcaaaaagtggtgaagcagaa
atatctgtggctgtcccgcagtccccagccccagcaactaaagggaaaaaacagaagggg
aaaagttctcaagtatctgttccatcttccccttccccttccccgagtccattcaactca
actggttcatccaatgaaccaggttgcacttctggtgcccaatctagtgatgctgcttta
cctcagataatggccttgcaggatactcttgatcagttgctgaacatgcagaaagaaatg
cagaagcagatgaatacaatgatttctgtcccagtttccaaagaaggtaaaagactagag
gcatccttgggccggagcatcgagaaaattatcagggctaacacagattctttatgggct
cgttttcaagaagaaaacacaaaacatgagaagttggagaaggaccgtatacagcagtta
actaatttgatcacgaattgtataaacaaggatttgccaacagctttggagaaaacttta
aagaaggaaatagctgcaattggacctgctgttgctcgtgctatcactcccattttggag
aaaagcatatcatcagctattacagagtcattccagaaaggggtgggagagaaggcggtg
aatcagttagagaagacggttagttcaaaacttgaagctacagtggccagacaaatccaa
tcacagtttcaaacatctggcaagcaagctcttcaggatgcattaaggtctacactggaa
gcttcaattattcctgcatttgagatgtcctgcaaggccatgtttgatcaagtcgatgcc
acattccagaatgggcttaataagcatataaatgacattcagcaacagtttaattccatg
cattctcctgtggccattgccctgagggatgctatcaattcagcatcatcactcacccag
accttaagtggagagctggcagatggtcaacggcagctcttagctttggcggctgcaggt
gcaaactcaaaagtgggagatccatcaacgaagttgggcaatggaccattgcctggtatg
catgagatgcctgaggtgcctttggatccaacaaaagaattgtcaaggttgatagctgag
cagaaatatgaggaagcgttcaccttagctctgcacagaagtgatgtctcaatagtttcc
tggttatgttctcaggttgatctacagggtatattgtcaatttcaccactacctttaagc
caaggagttctgctggcccttctacagcaactggcatgtgattttagtaatgaaacctct
agaaagttggcatggatgacagatgtggctgctgccataaaccctacagatccaatgatt
gcgatgcatgtaggaccaatttttgatcaagtctatcagatagtggtccatcaaaggagt
ctgcccagcacatctgcttcagaagcctcaggcatacgtgttcttctggttgtcataaat
tctgtgctaaggagctgtaaatga
DBGET
integrated database retrieval system
