Populus euphratica (Euphrates poplar): 105137040
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Entry
105137040 CDS
T05872
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
peu
Populus euphratica (Euphrates poplar)
Pathway
peu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
peu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105137040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
peu03041
]
105137040
03009 Ribosome biogenesis [BR:
peu03009
]
105137040
Enzymes [BR:
peu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105137040
Spliceosome [BR:
peu03041
]
Complex A
U2 snRNP components
U2 related factors
105137040
Complex B
105137040
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
105137040
Ribosome biogenesis [BR:
peu03009
]
Eukaryotic type
90S particles
Helicases
105137040
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
nSTAND3
ResIII
ABC_tran
SRP54
AAA_30
T2SSE
Flavi_DEAD
AAA_33
PhoH
SLFN-g3_helicase
TsaE
AAA_7
Motif
Other DBs
NCBI-GeneID:
105137040
NCBI-ProteinID:
XP_011040915
LinkDB
All DBs
Position
Unknown
AA seq
729 aa
AA seq
DB search
MMGTERKRKVSLFDVVDEASVSAKLLKSNGAMNNNNNEGSSSINRWNGKPYSQRYYEILE
KRKNLPVWHQKEDFLQVLKRNQVLVLVGETGSGKTTQIPQFVLEAVELESSDRRRKMMIG
CTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDP
LLERYKVIILDEAHERTLATDVLFGLIKEVLKNRPDLKLVVMSATLEAEKFQGYFGEAPL
MKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHLCEPHGDILVFLTGEEEIEDACRKIT
KEIGNLGDQVGPVKIVPLYSTLPPAMQQKIFEPAPPPLQEGGPSGRKIVVSTNIAETSLT
IDGIVYVIDPGFSKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKS
FNQDLQPQTFPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGAL
DDEGNMTKLGEIMSEFPLDPQLSKMLVVSPEFNCSNEILSISAMLSVPNCFVRPREAQKA
ADEAKARFGHIDGDHLTLLNVYHAFKQNNEDPSWCYENFINHRALKAADNVRQQLVRIMA
RFNLKLCSTDFNSRDYYINIRKAILAGYFMQVAHLERSGHYLTVKDNQAVHLHPSNCLDH
KPEWVIYNEYVLTSRNYIRTVLDIRGEWLVDIASHYYELDNFPQCEAKRVLEKLYKKRER
EREDNKNRK
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgatgggtacagagaggaagaggaaggtgagtttgtttgacgtggtagacgaggcgtcg
gtttctgcaaagttgttgaaatcgaacggagcgatgaacaacaataacaatgaaggaagc
agctcgataaatcggtggaacgggaagccttactctcagagatactacgagatattagag
aagaggaagaatttgcctgtttggcatcagaaagaggattttttacaggttttgaagaga
aatcaggttctcgtccttgttggtgagactggtagtggtaaaactactcagattcctcag
tttgttttggaggctgtcgaattagaatcttcagatagacgcaggaaaatgatgattggg
tgtacccagcctcgaagggttgctgcaatgtctgtttctaggcgtgttgctgaggagatg
gacgttactataggtgaagaggttggttatagcatccgttttgaagactgtagcagtgca
agaacggttttgaagtatctgactgatggtatgcttttaagagaggcaatgacagatccg
cttttggaaaggtacaaagtaataatacttgatgaggctcatgaaagaactctagcaaca
gatgtgctatttggacttattaaagaagtgctgaaaaataggcctgacctgaagctagtt
gtaatgagtgcaacactagaggctgagaaatttcagggttattttggtgaagcacctctt
atgaaagttcctggcaggcttcatccggttgagattttttatacccaggagcctgagaga
gattacctagaggcagctattcggacagttgtccagatacacttgtgtgaaccccatggg
gacatacttgttttcctaactggtgaggaggagatagaagatgcttgccgaaaaataaca
aaagaaattggaaatttaggggaccaagtagggccagtgaaaatagtgcctctatattct
acgcttccaccggccatgcagcaaaaaatatttgaacctgctccacctccactacaggag
ggtggcccgtctggaaggaagattgtggtgtcaacaaacattgcggaaacttctttgact
atagatggtattgtctatgttattgaccctggtttttctaaacagaaggtttataacccc
cgagttcgggttgaatctttgttagtttcccccatatcaaaggctagtgctcaccagaga
tcaggacgtgctggaagaactcaaccaggcaaatgttttagactctacacagagaagagt
ttcaatcaggatctccagccacagacctttccagaaatattgcggtcaaacctggcaaat
acagttctaacgttgaagaaattggggattgatgatctggtgcactttgatttcatggat
cctcctgcccctgagacattgatgcgagcattggaggtgttgaattatttgggagcattg
gatgatgaggggaacatgacaaagcttggggagatcatgagtgaatttcccttggatcct
caactgtcaaagatgctcgttgtgagtcctgaattcaactgttcgaatgaaattctttca
atttcggccatgctttcagtacccaattgctttgtccgccctagggaggctcaaaaggct
gccgatgaagcgaaggctaggtttgggcacattgatggggatcacctcacgctgttgaac
gtataccatgcatttaagcaaaacaatgaggatccatcctggtgctatgaaaattttatc
aatcatagggcattgaaggctgctgacaatgtaagacaacagcttgtgcgtatcatggcc
aggtttaacctcaagttatgcagcactgacttcaacagccgtgactactacatcaacata
agaaaagctatattagccggatacttcatgcaggttgctcaccttgaacgatctggacac
tatttgacagtgaaagacaaccaagcagtgcatttgcatccatcaaattgtttggatcac
aagccagagtgggttatttacaacgagtatgtcctaaccagcaggaattatattcgtacc
gtgctagacattcgtggtgaatggttggtggacatagcatcacattactatgagttggat
aacttcccacaatgtgaggccaagcgggttcttgaaaagctttacaagaagcgggagagg
gagagggaggacaacaagaacagaaaatga
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integrated database retrieval system
