Populus euphratica (Euphrates poplar): 105137995
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Entry
105137995 CDS
T05872
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
peu
Populus euphratica (Euphrates poplar)
Pathway
peu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
peu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105137995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
peu03041
]
105137995
Enzymes [BR:
peu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105137995
Spliceosome [BR:
peu03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
105137995
Complex B
105137995
Complex C
U2 SnRNP specific factors
105137995
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
DUF3006
Motif
Other DBs
NCBI-GeneID:
105137995
NCBI-ProteinID:
XP_011042271
UniProt:
A0AAJ6V7F4
LinkDB
All DBs
Position
Unknown
AA seq
800 aa
AA seq
DB search
MSKRKFGFEGFGINRQATYNFERSQAPQRLYVPPSSRQNHDNYEDTDLDNIDYADNDAAK
ESAENNGSAAEIDPLDAFMEGIHEEMRAAPPPNAKEKVERYKDDDDEDDDPMESFLRAKK
DLGLTLAADALHAGYDSDEEVYAAAKAVDAGMLEYDSDDNPVVVDKKKIEPIQALDHGSI
EYEPFSKDFYEESPSISEMSEQDVAEYMKSLAIRVSGFEVPRPIKTFEDCGFSPQLMNAI
AKQGYEKPTPIQCQALPIVLSGRDIIGMAKTGSGKTAAFVLPMIVHIMDQPELAKEEGPI
GVVCAPTRELAHQIYLETKKFSKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLI
DMLKMKALNMSRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKIEKL
AREILTDPVRVTVGEVGRANEDVTQVVQVIPSDAEKLPWLVEKLPGMIDEGDVLVFASKK
ATVDDIESQLAQKAFKVAALHGDKDQASRMEILQKFKSGVYHVLVATDVAARGLDIKSIK
SVVNFDIAREMDVHVHRIGRTGRAGDKDGIAYTLITQKEARFAGELVNSLIAAGQNVSVE
LMDLAMKDGRFRSKRDSRKGGGKKGKGRGGGSRGVRGVDFGLGIGYNPESNSTSSPAVTS
RSTAVNSLRTGVMAQFKSNFVAATSNSQSPGLNTSSSVYANKRPALRGFVSGGSIGGDMN
RPQTTSSLPGFVSGGSIGVDMDRPPTTSSLPGFASGGSIGGDATQTRTVSQNSGGNTSQK
NTEGSRDRGRERRRPSGWDR
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagcgaaaattcggattcgaagggtttggcataaatcgccaagcaacgtacaac
tttgaaagatcccaagctccgcaaaggctctacgtccctccttcctctcgccaaaaccac
gataactacgaggataccgaccttgacaacattgattacgccgataatgatgccgccaag
gagagtgcagaaaataatggctcagctgctgaaattgaccctctggatgcgttcatggag
ggaatacacgaggagatgagggcagcaccaccgccgaacgctaaggagaaggtggagagg
tataaggatgatgatgatgaagacgatgatcctatggagagttttttgagggcgaagaag
gatctggggttgacgctggccgcagatgcacttcatgctggttatgattccgatgaggag
gtttatgcagcggcaaaagctgtggatgcggggatgctggagtatgattctgatgataat
ccggttgttgttgataaaaagaagattgagccgattcaagctcttgaccatggttctatc
gagtatgagccttttagcaaggatttctatgaggagagcccatcgatttcagagatgagc
gagcaggatgttgcggaatacatgaagagtctggctatccgtgtttcaggttttgaagtt
ccaaggccaattaaaacatttgaagattgtggtttttcaccacaactgatgaatgctatt
gcgaaacaagggtatgaaaagcctacaccaatacagtgccaagctctgccgattgtgctt
tccggtagagatattattggtatggcgaagacaggttcaggtaagactgctgcttttgta
cttcctatgatcgttcatattatggatcagcctgaactcgcaaaagaagaaggtccgata
ggagtagtatgtgcgcctactagggaattggcgcatcagatatacttggagacaaaaaag
ttttctaaatcacatgggatacgggtttctgctgtgtatggtggaatgtccaagcttgat
cagttcaaagaactcaaggcagggtgtgagattgttatcgctacacctgggagattaatt
gacatgttaaagatgaaggcactaaatatgtcgagagcaacttacttggtacttgatgag
gctgatcggatgtttgaccttggatttgagccacaaataaggtctattgttggtcagatt
agaccagatcgccagactttactattttcagctacaatgcctcgcaaaattgagaagtta
gctagggagatcctcactgatcctgtgagagttacagtgggggaggttggaagggccaat
gaggatgttactcaggttgttcaagttattccttctgatgcggagaagttgccttggctt
gtcgaaaagctacctgggatgattgatgagggtgatgttctggtttttgcttctaagaag
gctactgtggatgatattgagtcacaattggctcaaaaggcatttaaagttgcagccctt
catggtgataaagaccaggcttctcggatggaaattttacaaaaatttaaatctggtgtc
tatcatgttcttgttgcaactgatgttgctgctcgtggacttgacatcaagtcaattaag
tctgtggtcaacttcgatattgcaagagagatggatgtgcatgtccatcgcattggtagg
accggtcgagctggtgataaagatgggattgcatacactcttataactcagaaagaagca
cggtttgctggtgaattagttaacagtttgattgctgctggtcagaatgtctctgtggaa
cttatggatcttgccatgaaggatggaagattcaggtccaaacgtgattccagaaaagga
ggtgggaaaaagggcaaagggaggggtggaggcagtcgaggcgtacgtggggtggatttt
ggtcttggcattggttataatccagaatccaatagtacttcatctcctgctgttacaagt
cgatctactgctgttaattcgctgaggacaggggtgatggcacaattcaagagcaacttt
gttgcagcgacatcaaactcccaaagtccaggcttgaataccagctcaagtgtttatgct
aacaagagaccagctctgcgaggatttgtctctggtggttcaattggcggagatatgaat
agacctcagacaaccagttcattgcctggatttgtctctggtggttcaattggagtagat
atggatagacctccgacaaccagttcattgcctggatttgcctctggtggttcaattgga
ggagatgctactcaaactcggacagtcagtcagaactctggaggaaatacaagtcagaag
aatacagaaggttccagagatagagggagagagaggcggaggccctctggttgggaccgc
tag
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integrated database retrieval system
