Populus euphratica (Euphrates poplar): 105138235
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Entry
105138235 CDS
T05872
Name
(RefSeq) ATP-dependent RNA helicase DHX36 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
peu
Populus euphratica (Euphrates poplar)
Pathway
peu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
peu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105138235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
peu03019
]
105138235
03012 Translation factors [BR:
peu03012
]
105138235
Enzymes [BR:
peu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105138235
Messenger RNA biogenesis [BR:
peu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
105138235
Translation factors [BR:
peu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
105138235
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
Rad17
AAA_19
T2SSE
ABC_tran
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
105138235
NCBI-ProteinID:
XP_011042579
UniProt:
A0AAJ6Y588
LinkDB
All DBs
Position
Unknown
AA seq
1034 aa
AA seq
DB search
MLPARRLLGAPSFFSKHLLLAAPALSSTTLSYIHRDISTQAMSRRPNFQGGRRGGGGVPG
RGGDRGRGRGGRGGGRGEQRWWDPVWRAERLRQKQSEMEVLDEDEWWSKMEQMKLRGEQE
IIMKRSFSRDDQQKLFDMAFELGLHFHAYNKGKTLVVSKVPLPDYRADLDEQHGSTQKEI
QMPTDIERRVGNLLNSSQKAAAGNESDATSSQGGKHGSLGGKMVKPASMLETDAAKEKQS
IELKQKQDKLKASSSVKEMQSFREKLPAFKMRTEFLKAVEENQVLVISGETGCGKTTQLP
QYILEEGISSLRGAHYNIVCTQPRRISAISVAARIASERGESLGETVGYQIRLEALRSAQ
TRLLFCTTGVLLRQLVQDPDLTGVSHLVVDEIHERGMNEDFLLIILRDLLPRRPNMRLIL
MSATINADLFSKYFRNAPTIHIPGLTFPVSEFYLEDVLEKTHYEIQELDSFQGNSRQRRR
EQYSKKDPITELFEEVDIGSQYKNYSASTRLSLEAWSGSQLDLGLVEAAIEYICRHEREG
AVLVFLTGWDEISKLLEQIKGNKLLGDQSKFLVLPLHGSMPTINQREIFDRPPPNKRKIV
LATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWVSKASAHQRRGRAGRLQP
GVCYRLYPKIIHDSMLQYQLPEILRTPLQELCLHIKSLQLGAVGSFLSKALQPPDPLAVE
NAIELLKTIGALDDKEELTPLGRHLCTLPVDPNIGKLLLMGCVFQCLSPALTIAAALAHR
DPFVLPIDRKREADAAKRSFAGDSCSDHIALAKAFEGYKEAKCNRNERAFCWEYFLSPVT
LRMMEDMRDQFLNLLSDIGFVDKSRGVSAYNQYSHDMEMVSAILCAGLYPNVVQCKRRGK
RTAFFTKEVGKVDIHPASVNAGVHLFPLPYMVYSERVKTTSIYVRDSTNISDYALLLFGG
NLVASKNGEGIEMLRGYLHFSASKSVLDLIQKLRGELDKLLSKKIEEPCLDINVEGKGVV
SAVVELLHSYNVRY
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atgttaccagctcgtcgcttactcggtgctccctctttcttttccaaacatctcttacta
gctgcgcctgcgttatcttcaacaactctctcgtacattcatcgagacatctcaactcag
gccatgtcacgccgtcctaatttccaaggcggccgtcgcggaggcggaggcgtacccggt
cgtggtggtgatagaggacggggacgaggaggacgtggaggaggacgtggtgagcagcgg
tggtgggatcctgtttggagagcggaacgattgagacaaaaacagagtgagatggaggtt
cttgatgaagatgaatggtggagtaaaatggagcaaatgaagcttagaggggagcaagaa
ataataatgaagcgtagttttagccgcgatgatcagcaaaagctgtttgatatggctttc
gaattggggcttcacttccatgcatacaataaaggcaaaacccttgttgttagcaaagtt
ccactaccagattatcgagctgatcttgatgagcaacatggatccacacagaaagagatc
caaatgcctacagatattgagaggagagttggaaatcttttgaatagctcacaaaaagca
gcggctggaaatgagtccgatgcaacttcttcgcagggaggcaaacatggatctcttggt
ggtaaaatggtgaaacctgcttccatgttggaaacagatgctgctaaggagaaacagagt
attgaactaaagcagaagcaggataaattaaaggctagtagcagcgtgaaggaaatgcag
tctttcagagaaaagcttcctgcattcaaaatgagaactgaatttctgaaagcagttgaa
gaaaatcaggtattggtaatttcaggggaaacaggttgtggtaaaacaacacagcttcct
cagtatatattggaggagggaatatcatctctacgtggtgctcattacaacatagtatgc
acacaaccccgccgtatatctgccatttctgttgctgcacgaatagcatctgaaagggga
gagagccttggtgaaactgttggttatcaaattcgtctggaagcattacgatctgctcaa
acccggctccttttttgcaccactggtgtattacttcggcagctggttcaggatccggat
ttaactggtgtgagccatttggtagtggatgaaattcatgaaagaggaatgaatgaggac
ttcctgctgattattttgcgcgaccttcttcctcggcgtccaaatatgcgtcttattcta
atgagtgctaccattaatgctgacttgttctctaaatacttcagaaatgccccgactatt
catatcccgggattaactttccctgtatcagagttctatctagaagatgtgttggagaaa
actcactatgaaattcaagagttggacagctttcaggggaattcaagacaaagaagaaga
gagcaatattcaaagaaggatcctataactgaattattcgaggaagttgatattggttct
caatataaaaattacagcgcatcaacaagactttctctggaagcttggtcgggttcacag
cttgacttgggtctggtggaggcagcaattgaatatatttgtcgtcatgaacgtgaggga
gctgttcttgtttttctcacaggctgggatgagatctccaagctgcttgagcagattaaa
ggaaacaaacttctaggagatcaaagcaagtttctagtccttcccctacatggttcaatg
ccaaccataaatcaacgtgaaatttttgaccgtcctccccctaacaagcgaaaaattgtt
ctggcaacaaatattgcagagagcagtattaccatagatgatgtggtgtatgttgtagac
tgtggaaaggcaaaggaaaccagttatgatgcactgaacaagctggcttgtttgttacca
tcgtgggtttcaaaggcttcagcacatcagagacgggggcgtgctggccgattgcaacca
ggagtttgttatagattgtatccaaaaatcatacatgattcaatgcttcaatatcaatta
ccagaaatactgagaacacctttgcaagaactgtgtctgcatataaaaagtttgcagctt
ggagctgtgggatcgtttttgtcaaaggctttacagccaccagatcctcttgctgtggaa
aatgcaattgaactacttaaaaccattggggctttagatgataaggaggagcttactcca
ctcggtcgtcatctttgtactctccctgtggacccaaatattgggaagttgcttttgatg
gggtgtgtctttcaatgcctcagccctgctttaacaattgctgctgctcttgcacatcgt
gacccatttgtgctgccaatagacaggaaaagggaagctgatgctgcaaaaagatccttt
gctggtgactcttgcagcgaccacatagcacttgctaaagcttttgaaggatacaaggaa
gcaaaatgcaaccgaaatgaaagagcattttgttgggagtatttcttgtcccctgttact
ttgcggatgatggaggatatgagagaccagtttctgaacttgctatcagacattggcttc
gtagacaaatccaggggtgttagtgcttataatcaatatagccacgacatggagatggta
tcagcaatcctttgtgctggtctttacccaaatgttgtgcaatgtaaaagaagaggaaag
cgaacagcattcttcactaaggaagttgggaaggtcgacatccatcctgcatctgtaaat
gctggggtccatctcttccctctgccttacatggtttatagtgaaagggtgaaaacaact
agcatttatgtccgagactcaacaaatatttcagattatgctttgcttctttttggtggt
aatcttgttgccagcaaaaatggagagggtattgagatgctaagaggttacctccatttc
tctgcatcgaagagtgtattggatttgatacagaaactgaggggagaactagacaagctt
ctgagtaagaaaattgaggaaccatgcctggacattaacgtggagggaaagggagttgta
tctgcggtggttgagttactgcacagttacaatgtaaggtactaa
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