Populus euphratica (Euphrates poplar): 105139013
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Entry
105139013 CDS
T05872
Name
(RefSeq) polyadenylation and cleavage factor homolog 1-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
peu
Populus euphratica (Euphrates poplar)
Pathway
peu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
peu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105139013
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
peu03021
]
105139013
03019 Messenger RNA biogenesis [BR:
peu03019
]
105139013
Transcription machinery [BR:
peu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
105139013
Messenger RNA biogenesis [BR:
peu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
105139013
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
Pcf11_C
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
105139013
NCBI-ProteinID:
XP_011043594
UniProt:
A0AAJ6V9I8
LinkDB
All DBs
Position
Unknown
AA seq
541 aa
AA seq
DB search
MTATLITRKDHHRPRVVPNLHNPVLDSEKRSRTSYMAQQQQGGDYYHRNQLGLQAKKPRV
DRFNNNGAVNFGPKIQSFPQFEGKKVEINYGVSGFDARVQARKPELSNNGVLTPMFRPLP
QLQDQKAEGSNGFFMPNLQAGKPEGNNFVVSRPYPPFSQQFQGKKPGFYNGFSVPNYQVS
RHFQDSSLKVDNGVFNPNHPAMQQDQEKKSEVNKGFFMPNLNLYSSKSLGGPLYSMPNPA
IVKPMLNQNVTNMCLLNSQSHSSLASSVNKNGGFTPNPPVMQLNLVNRSAANVPLNSQAQ
VASCYSDLLTTLVGNGIVSLAKHEVQSNNANSCEFNCAPKLLETSNQLVANGCPGLRNSL
MSSLIKKEDDFRGVVVFDTNQLKVRHESVIRSLYADMPRQCSTCGIRFKFQEDHSKHMDW
HVIKNWTIKISKQRSISRMWLDGVDMWLAARAGVAAVPGFAKADAPVEKEKEEDWISSTD
ENKVCALCREPFEEFYSHEADDWIFRGAVYLNAEKKSAAESMDRSRLGPAVHAKCRPASK
K
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atgactgcaacactaataacaaggaaagatcatcatcgccctagggtagtgcctaatctt
cacaatccagttcttgattctgaaaagagatcaagaacaagttacatggcacagcagcaa
caaggtggagactattatcatcgtaatcaactagggcttcaagccaagaaaccgagggtc
gatcgttttaataataatggggctgtcaatttcggtccaaagattcaatcttttccgcag
tttgagggcaagaaagtggagattaattatggggtttctggtttcgatgctagggttcaa
gcccggaagccagagttgagtaataatggggttttgacaccgatgttccggcctttgcca
caacttcaggatcagaaagcagaggggagtaatggtttttttatgccaaatttgcaagct
gggaagcctgagggtaataattttgtggtttcaaggccgtatcctccattttcgcagcaa
tttcaaggcaagaagccagggttttataatgggttttcagtgccaaattatcaagtttct
cgacattttcaagacagtagtttgaaggttgataatggagttttcaatccaaatcatcca
gctatgcagcaggatcaagagaagaagtcagaggttaacaaggggttttttatgccgaac
cttaatttgtatagttcaaagtcactaggaggccctttgtattcaatgccaaatcctgcc
attgtaaagcccatgttgaatcaaaatgtaactaacatgtgtttgctgaattcacaatca
catagttctcttgcgtcttctgttaataaaaatgggggtttcactccaaatcccccagtt
atgcagcttaatttggtgaatcggagcgctgcaaacgtgcctttgaattcacaggctcaa
gtagcctcttgctactctgatttgctaaccactttggttggcaatggaatagtttctttg
gctaaacatgaagtccaaagtaataatgcaaatagttgcgaattcaattgtgcaccaaag
ttgctggaaaccagtaaccaacttgtggctaatggatgtcctggtttgagaaattcactc
atgagttccttgattaaaaaggaagatgattttaggggtgttgttgtatttgatacaaac
caacttaaggtgaggcatgaatctgtgattagatccttgtatgctgatatgccaagacaa
tgctccacatgtggaatcagattcaagttccaagaagatcatagcaagcatatggactgg
catgtgattaaaaactggacaatcaagatatctaagcagagaagcatttctcgtatgtgg
ttggatggtgtagatatgtggctggctgccagggcaggtgttgctgcagttcctggattt
gcaaaagctgatgctcctgtagagaaggaaaaagaagaagattggataagttccactgat
gaaaacaaagtatgtgccttgtgtcgagaaccatttgaagaattctacagccacgaggct
gatgactggatattcagaggagctgtctacctgaacgcggaaaagaaatcagcagctgaa
agcatggataggagtcgattaggtcctgctgtgcatgccaagtgcaggccagcgtccaag
aagtaa
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