Populus euphratica (Euphrates poplar): 105139150
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Entry
105139150 CDS
T05872
Name
(RefSeq) protein RRP45A-like isoform X1
KO
K03678
exosome complex component RRP45
Organism
peu
Populus euphratica (Euphrates poplar)
Pathway
peu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
peu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105139150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
peu03019
]
105139150
Messenger RNA biogenesis [BR:
peu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
105139150
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
105139150
NCBI-ProteinID:
XP_011043789
LinkDB
All DBs
Position
Unknown
AA seq
462 aa
AA seq
DB search
MDGRLANAWRLTVNEKKFIETALVSNLRIDGRNPLEYRKISIKFGREDGSSEVHLGQTHV
MGFVTGQLVQPYQDRQNEGMLLIFTEFSPMADPSFEPGHPGESAVELGRIVDRGLRESRA
VDTESLCVLSGKLVWAIRIDLHILDNGGNLVDAANIAALAALLTFRRPECTLGGGDGQEV
TVHPPEEREPLPLIVHHLPIAITFAFLGSEGKMVVDPTHNEEAVMGGRMTVTVNAIGDIC
SIQKAGGEGVPQSVIMHCLQLASMSAESITKKINNAVEAYSTERALRKIKRHPTAAGNVS
VAGSDVKEQNKTVEQVGGSELSRHHMERLKLVSEETCSSRSNDNDGDIKSSEQGGTTRAE
SNAVSFLGGPSSWDPYLKGVDDDSLKANVASPGISMQHMEQKESKENSPKMDTEKPTEDI
KQATLATDTSGTALETNGGKTLKDAVKPKNKRRKRASSMNAS
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atggatggaagattagcgaatgcatggagattaacagtgaacgagaagaaattcatagag
actgctttggtttcaaaccttagaattgatggtcgcaatcctcttgaatatcgtaaaatt
agcatcaagtttggcagagaagatgggtcatcggaggtgcatctaggacaaactcatgta
atgggttttgtgactggtcaattagttcaaccttatcaagaccgacagaatgaagggatg
cttttgattttcacagagttctctccaatggctgatccttcatttgagccaggccaccct
ggggaatctgcagtggagttgggtcgaatagtagatcgtggtctaagggagagcagggct
gtggatacagaatctctttgtgttctttcgggaaaattagtgtgggccattcgtattgac
cttcatatcttagataatgggggaaatcttgttgatgccgccaatattgctgctttggcc
gctctcttaacatttcgaagaccagaatgcactttaggtggtggtgatggtcaggaagta
acagtacatccaccagaggaaagagaaccgcttcctttgatagtccaccatctccctata
gcaataacttttgcatttttaggcagtgagggaaaaatggtggttgatcctacccacaat
gaggaggctgttatgggtggaagaatgactgtaacagttaatgcaattggtgatatttgt
tcaattcagaaagctggaggggagggcgtcccacagagtgttattatgcattgtttgcaa
cttgcttctatgagtgctgaatccataacaaagaagataaataatgcagttgaagcatac
agcacagagagagcattgcgcaagatcaagcgccaccctactgctgctggcaatgttagt
gtagctggtagtgatgtaaaagagcaaaataaaactgttgagcaggtgggaggtagtgag
ttgtcgaggcatcatatggagagattgaagctggtatctgaggaaacctgcagcagtaga
agtaatgacaatgatggtgatatcaaatcatctgaacaaggtggaacaactcgagcagag
agcaatgctgtgagttttcttgggggtccatcaagctgggatccttatttgaagggtgtt
gatgatgattccctgaaagctaatgtagcctcacccggaatatcaatgcagcatatggaa
caaaaagaaagtaaggaaaatagtcccaaaatggacacagagaaaccaacagaagatatt
aaacaagccactttagctacagatacatctggaactgcactggaaacgaatggagggaaa
actttgaaggatgctgtgaagcccaagaacaagaggagaaagagggcttccagcatgaat
gcaagttag
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