Populus euphratica (Euphrates poplar): 105140881
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Entry
105140881 CDS
T05872
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
peu
Populus euphratica (Euphrates poplar)
Pathway
peu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
peu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105140881
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
peu03041
]
105140881
03009 Ribosome biogenesis [BR:
peu03009
]
105140881
Enzymes [BR:
peu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105140881
Spliceosome [BR:
peu03041
]
Complex A
U1 snRNP components
U1 related factors
105140881
Complex B
105140881
Ribosome biogenesis [BR:
peu03009
]
Eukaryotic type
Pre-60S particles
Helicases
105140881
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
105140881
NCBI-ProteinID:
XP_011046220
UniProt:
A0AAJ6VFM6
LinkDB
All DBs
Position
Unknown
AA seq
612 aa
AA seq
DB search
MNPYDNRYSDPDSYRHRHHRSDLMGQKTPVVPTMMGPFPRGGGAGVPPPPSFAGRGGPPP
GGGGYPAFERPASGFSVGRGGGGGGGGGGGFSGGRGSNFHGGDRRNDAGRGRGWNSGSGR
GGGGGRGGRFGGGDPRRELDNIALPKQDFGDLVPFEKNLYFENPSIRSMSEHEVVTFRAR
REITVEGHDVPRPIRIFQEANFPDYCLQVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAE
TGSGKTLAYLLPAFVHVAAQPRLVHGDGPIVLVLAPTRELAVQIQEEALKFGSKANIRST
CIYGGAPKGPQIRDLQRGVEIIIATPGRLIDMLGAQHMNLRRVTYLVLGEADRMLDMGFE
PQIRKIVSQIRPDRQTLYWSATWPREVEALARHFLHNPYKVIIGSQDLKANQSIKQVVEV
MMDLEKYKRLIKLLKEVMDGSRILIFMETKKGCDQVTRQLRMDGWAALSIHGDKNQAERD
WVLAEFKSGRSAIMTATDVAARGLDVKDIKCVVNYDFPSSLEDYVHRIGRTGRAGASGTA
LTFFTESNAKFARDLIKILQEAGQIVPPSLSAMTRSAGSFGGNFRSRGRGGFSNRRMISG
SNTVPLGAGRPW
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgaacccttacgacaaccgctactccgaccccgactcttaccgtcaccgtcaccatcgc
agtgacttaatgggccaaaaaactccagtggtacccacaatgatggggccttttcctcgt
ggcggtggtgctggggttcctccgcctccgtcttttgcgggtagaggcggtccccctcca
ggtggtggaggttatcctgcttttgagcgacctgctagtggattcagtgttggacgaggt
ggtggtggtggtggaggaggaggagggggatttagtggtggccgagggtctaattttcat
ggtggggatagaagaaatgatgctggccgtgggagaggctggaattctggttctggccgt
ggtggtggtggtggaagaggggggaggtttggagggggagatccaaggagagagttggat
aatattgcacttccaaagcaggattttggggacttggtgccttttgagaagaacttatac
ttcgagaatccttctattaggtctatgtcggaacatgaagtggttacgtttcgtgctaga
agagaaattactgttgaaggtcatgacgtgcctaggcctattcgaatttttcaagaggcc
aatttccctgattactgcttacaggtgattgctaagttgggttttgttgagccaacgcca
attcaagctcaagggtggccaatggctctaaagggtagagatctaattggcattgctgag
actggttctggtaagacactggcatatctgctaccagcttttgtgcatgttgctgctcag
cctcgattggtacatggtgatggtccgattgtgttagtattagctcctacaagagagctg
gcagttcagattcaagaagaagctttgaagtttggttcaaaggcgaatattaggagcaca
tgcatatatggcggtgctcccaagggaccccaaattcgtgatcttcaaagaggtgttgaa
attattattgctacccctggtcgactaatagatatgctgggagctcagcacatgaatttg
cgaagagtcacatacctagtgttgggcgaggctgatcgcatgttggacatgggctttgag
cctcaaattaggaaaattgtatctcagattcgaccagataggcagacattgtattggagt
gcaacatggcccagggaagtcgaagctttagcaaggcattttttgcataatccatacaag
gttatcataggatcgcaagatttaaaagcaaaccagtctataaagcaagttgttgaagtc
atgatggacctggagaaatacaaacggctgatcaaactgctgaaagaagtgatggatgga
agtcgaattctaatattcatggagacaaaaaaaggctgtgaccaagttacaaggcagttg
agaatggatggatgggcagctttgtccatccatggtgataaaaaccaggctgaaagggat
tgggtcctggcggaattcaaaagtggcagaagtgcgataatgactgccactgatgttgct
gcacggggtcttgatgtgaaggacataaaatgtgtggtcaactatgattttccttccagc
cttgaggattatgttcacaggataggccgaactggtcgagcaggagctagtggaactgcc
ttaacctttttcacagagtcaaatgcaaaatttgctagggatcttattaaaattctgcaa
gaagcagggcagattgtgcctccatcgttatctgctatgactcggtcagctggttctttt
ggaggtaacttccgttccagaggaagaggtggcttcagcaaccgccggatgatttcagga
tccaataccgtgccccttggtgctggtagaccttggtaa
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