Populus euphratica (Euphrates poplar): 105141071
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Entry
105141071 CDS
T05872
Name
(RefSeq) ATP-dependent RNA helicase DHX36-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
peu
Populus euphratica (Euphrates poplar)
Pathway
peu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
peu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105141071
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
peu03019
]
105141071
03012 Translation factors [BR:
peu03012
]
105141071
Enzymes [BR:
peu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105141071
Messenger RNA biogenesis [BR:
peu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
105141071
Translation factors [BR:
peu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
105141071
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
ATPase
AAA_19
T2SSE
ABC_tran
AAA_23
Motif
Other DBs
NCBI-GeneID:
105141071
NCBI-ProteinID:
XP_011046462
UniProt:
A0AAJ6VDL5
LinkDB
All DBs
Position
Unknown
AA seq
1155 aa
AA seq
DB search
MQNSKLILRSFLLGSCCTSTKKKSVSNTIFSNKNNNPLFVLPLLILNSNETSFSVSKRRG
FCGYAVEQFSDDEYGCDFESHKASSSVANVDEWKWKLSLLLRSETDQEIVSKDRKDRRDY
EQISNLATRMGLYSELYGKVVVASKVPLPNYRSDLDDKRPQREVVIPLSLQRRVEGLLQE
HLDRAQLKAENVGGSADDAMSTDQTGDISLDENKDSFPDHSVMERILQRRSLRMRNMQRA
WQESPEGRKMMDFRKSLPAFKEKEMLLQAIARNQVIVISGETGCGKTTQLPQYILESEIE
SGRGASCSIICTQPRRISAMSVADRVSAERGEPLGEAVGYKVRLEGVKGKNTHLLFCTSG
ILLRRLLSDHNLNGITHVFVDEIHERGMNEDFLLIVLKDLLPRRQDLRLILMSATLNAEL
FSNYFGGAPTIHIPGFTYPVRAQFLEDVLEMTGYKLTSFNQIDDYGQEKMWKTQRQLVQR
KRKNQITTLVEDALNKSSFENYSSRARDSLAHWMPDCIGFNLIEAVLCHICRKERPGAVL
VFMTGWEDISSLRDQLKAHPLLGDPNRVLLVTCHGSMATSEQKLIFEKPPPNVRKIVLAT
NMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISKASARQRKGRAGRVQPGEC
YHLYPRCVYEAFAEYQLPELLRTPLNSLCLQIKSLQVGSIGEFLSAALQPPESLAVQNAI
GFLKMIGALDEKENLTNLGTYLTMLPVDPKLGKMLIMGAIFHCFDPVLTIVSGLSVRDPF
LLPQDKKDLAGTAKSRFSAKDYSDHMALVRAYEGWKEAEREGSAYEYCWRNFLSAQTLQA
IHSLRKQFSFILKDTGLVEEDASNNNKLSHNQSLVRAIICSGLYPGIASVVHRETSMSFK
TMDDGQVFLYANSVNAHYETIPYPWLVFGEKVKVNTVFIRDSTGVSDSILILFGGALACG
VQAGHLKMLDGYIDFFMDHNLAECFLKLKEELDKLLQKKLQDPNLDTLKEGKYLMLAVQG
LVSGDQCEGRFVFGRESRKPHIINDNDSFTKDGANPKSLLQTLLMRSGHSPPKYKTKHLK
TNEFRALVEFKGMQFVGKPKRNKQLAEGDAAIEALAWLTHTSNNYQNEHDDSQPDVTDNM
LKLLGKRRRSKHHSG
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaattcaaagctaatactaagaagttttcttctgggatcttgctgcacctccacc
aagaagaagtcagtttccaataccatcttcagcaataaaaacaacaaccctttatttgtt
ttgcctttgcttatcctgaattctaatgaaaccagcttttcagtctccaaaaggcgtggt
ttttgcgggtatgcagtagagcagttctctgatgatgagtatgggtgtgattttgaaagc
cacaaggcttcttcgtcggtggccaatgttgatgaatggaaatggaaactcagtttacta
ttgcgtagtgaaacagaccaagagattgtttctaaagatagaaaagacaggagggactat
gagcagatatcaaatcttgctacaagaatgggactttatagtgaactatatggaaaagtg
gtggttgcaagcaaggttcctctacctaactacaggtctgatttggatgataagcggcca
caaagggaggtggttatcccactaagtttgcaaaggagggttgagggtttacttcaggag
catcttgatagagctcaattgaaggctgaaaatgttggtggtagtgcagatgatgccatg
tccaccgatcagactggagatataagtttagatgagaataaggattctttcccagaccat
tctgtgatggaaaggattcttcagaggaggagtttgcggatgcgtaacatgcaaagagct
tggcaggaatcacctgagggcagaaaaatgatggacttcaggaaatctctaccggctttc
aaagaaaaggagatgttactccaagcaatagcaaggaatcaggtcatagtaatatctgga
gagactggatgtggtaaaaccactcaactccctcaatatattctggagtcagaaatagaa
tctgggcgtggagcatcctgtagcataatttgcactcagcctcgaagaatatctgctatg
tctgttgcagatagagtatctgcagagagaggagagcctcttggtgaagcagttggttat
aaagttcgactagagggtgtgaaaggaaaaaacacccatctgcttttttgtactagtgga
attttactccgacgcctgttaagtgaccacaacttgaacggcataacccatgtttttgtt
gatgaaattcatgagcgaggcatgaatgaagacttcctattgattgtgctcaaggatctt
cttccacgtcgtcaagacttgagattgattttaatgagtgctactttgaatgcggaactc
ttttccaattattttggaggagcacctactattcatattccgggctttacatatccagtg
agggcacaatttttagaagatgtactagaaatgactggatataagttgacttctttcaat
caaattgatgattatggccaagagaaaatgtggaaaacacagaggcagctggtacagcgg
aaaaggaaaaaccagatcaccactcttgttgaggatgctcttaataaatcaagttttgag
aattatagttccagagcacgtgactctctggcacactggatgcctgattgcataggattt
aaccttattgaagcagttttgtgtcatatatgtcggaaggaaagaccaggtgctgtctta
gtgttcatgactggttgggaggatattagctctttgagggatcaacttaaagctcatcct
cttcttggtgatcctaacagagttctgcttgtaacttgccatggttctatggcaacctct
gaacagaaactgatatttgagaaacctcctcctaatgtacgtaaaatagttcttgcaaca
aacatggcagaggcaagtattacgatcaatgatatagtttttgttgtggattgtgggaaa
gcaaaagagaccacttatgatgctttaaacaatacgccctgcctgctaccttcttggata
tcaaaagcatctgcacgacaaagaaagggtagggctggccgagtgcagccaggggaatgt
taccacctatacccaagatgcgtttatgaagcttttgctgaatatcaacttcctgaactt
ttgaggactcccctcaactctctttgcttgcaaataaagagtttgcaggttggaagcata
ggggaattcttgtcagctgctctccagccaccagaatcattggctgttcaaaatgccatt
ggttttctgaagatgattggagcattggatgagaaggagaatctgacaaaccttgggacg
tatttgacaatgcttccagtagatccgaagctgggtaaaatgttaataatgggcgctatc
tttcattgctttgatcctgtgttaacaatagtgtccgggctcagtgtcagggatcctttc
cttctgccacaggacaaaaaggatttagctgggacagcaaaatctagattttctgcaaaa
gactacagtgatcatatggctcttgtccgtgcatatgaaggatggaaagaagctgaaaga
gaagggtcagcatatgagtattgctggagaaatttcctatctgcacaaactttgcaggcc
atccattctctgaggaagcagtttagcttcattttaaaagataccggcttagtagaagaa
gatgcaagcaacaacaacaaattaagtcacaaccaatcattggttcgtgcaattatatgc
tctggcctctatcctggaattgcatcagtggtgcatagagaaacatccatgtctttcaaa
acaatggatgatggccaagtttttctatatgctaattctgtgaatgcacattatgaaaca
attccttatccatggctggtctttggtgaaaaagtaaaggtcaacacagttttcatacgt
gattccactggtgtatctgattcaatactgatcctttttggtggtgcccttgcttgtggg
gtacaggctggacatctgaaaatgttggatggatatattgatttcttcatggatcataat
ttggcagagtgcttcttgaagcttaaagaagaacttgataagctccttcagaagaagctt
caagatcctaaccttgacacacttaaggaaggaaaatacctcatgcttgctgttcaaggg
ctggtatcaggagatcaatgtgaaggaagatttgtatttggtcgcgaaagcaggaagcct
catataattaatgataatgacagctttacaaaagatggagcaaatccgaaaagtttgcta
caaacactactgatgagatctggacactcccccccaaaatacaagacaaagcaccttaag
acaaatgagtttagggcactggtcgaattcaagggaatgcagtttgttgggaaacccaag
agaaacaagcaactagcagagggggatgctgctattgaggcactggcctggttaactcac
acttccaacaactatcaaaacgagcatgacgattcccaacctgatgtcactgacaacatg
ctgaaacttctcggaaaacgccgtagatcaaagcatcactctggttga
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