Populus euphratica (Euphrates poplar): 105141391
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Entry
105141391 CDS
T05872
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
peu
Populus euphratica (Euphrates poplar)
Pathway
peu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
peu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105141391
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
peu03019
]
105141391
Messenger RNA biogenesis [BR:
peu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105141391
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105141391
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
105141391
NCBI-ProteinID:
XP_011046891
UniProt:
A0AAJ6VG95
LinkDB
All DBs
Position
Unknown
AA seq
217 aa
AA seq
DB search
MDTEFPGIVVRPVAGYPYNRHRDPTAHYLSLKANVDLLNLIQIGLTIADEYGNLPDLGFK
DLCFIWEFNFRDFDVAHDAHAHDSVELLRRQGIDFEKNRELGIDSVKFAELMLPSGLVLN
QSVSWVTFHCAYDFGYLVKCLTHKVLPEGLNEFLELVRMFFGDRVCDIKHIIRFCAGLYG
GLDRVCKEVGVDRVIGKSHQAGSDSLLTLHAYMKIKD
NT seq
654 nt
NT seq
+upstream
nt +downstream
nt
atggacacagagtttcccggtatcgttgtccgtcctgtcgccggatatccgtacaaccgc
catcgtgacccaaccgctcactacttgagcctcaaagccaacgttgatctcttaaatctg
atccaaataggactcacgatcgctgacgagtatgggaatttacccgatctaggttttaaa
gatctctgcttcatttgggaattcaattttagggattttgacgtggcgcatgatgcacat
gcgcatgactcggtggagttgttgaggcggcagggaattgatttcgagaagaatcgggag
ctcgggattgactcggtgaaattcgctgagttgatgttgccgagtggactcgtgctgaat
cagtcagtgagttgggtaacgtttcactgtgcttatgattttggttacttggtgaaatgt
ttgactcataaagtgttgccagaggggttaaatgagttcttggaattagtgaggatgttt
tttggagatagggtttgtgatataaagcatataataaggttttgtgcgggtttatatggt
ggattggaccgggtatgtaaggaagtgggcgtggatcgggttatagggaagagtcaccaa
gccgggtcggatagtttgttgacattgcatgcttatatgaagataaaagactaa
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