Populus euphratica (Euphrates poplar): 105141740
Help
Entry
105141740 CDS
T05872
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1
KO
K15172
transcription elongation factor SPT5
Organism
peu
Populus euphratica (Euphrates poplar)
Pathway
peu03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
peu00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
105141740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
peu03021
]
105141740
03019 Messenger RNA biogenesis [BR:
peu03019
]
105141740
Transcription machinery [BR:
peu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
105141740
RNA polymerase I system
105141740
Messenger RNA biogenesis [BR:
peu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
105141740
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW1_SPT5
KOW4_SPT5
KOW
Spt5-NGN
KOW6_SPT51-2
KOW2_Spt5
KOW7_SPT5
KOW5_SPT5
KOWx_SPT5
Spt5_N
GPKOW_C
DUF4438
ProQ_C
KOW6_SPT5
Motif
Other DBs
NCBI-GeneID:
105141740
NCBI-ProteinID:
XP_011047385
UniProt:
A0AAJ6VFR3
LinkDB
All DBs
Position
Unknown
AA seq
1039 aa
AA seq
DB search
MARRRDEDDDLEDEEYEEQEEQLIDDEEEEYEEEEEEDRGAAIKKRRRSDFIDDIAEEED
EEEEDDDDDEDYGGGGGGGAGGGRKQKGKKRRGSEFFDDIAQVASDDEEEEEDAEDDFIV
DDHGADLPDEAGGRRMHRPLLSREDDQEDVEALERSIQARYAKSMHSEYDEETTEVEQQA
LLPSVRDPKLWMVKCAIGRERETAVCLMQKYIDKGSELQIRSVVALDHLKNYIYIEADKE
AHVREACKGLRNIFGQKIMLVPIREMTDVLSVESKVIDLSRDTWVRMKIGTYKGDLAKVV
DVDNVRQRVTVKLIPRIDLQALANKLEGREAPKKKAFVPPPRFMNVDEARELHIRVERRR
DPMTGDYFENIGGMLFKDGFLYKTVSMKSISAQNIKPSFDELEKFRSPGENGDGDVASLS
TLFANRKKGHFMKGDAVIVVKGDLKNLKGWVEKVDEENVHIRPEMKGLPRTLAVNEKELC
KYFEPGNHVKVVSGTHEGVTGMVVKVEQHVLIILSDTTKEHIRVFADDVVESSEVTTGVT
KIGDYELHDLVLLDNMSFGLIIRVESEAFQVLKGVTERPEVALVRLREIKCKIEKKTNVQ
DRYKNTVSVKDVVRIIDGPCKGKQGPVEHIYRGVLFIYDRHHLEHAGYICAKSHSCVVIG
GSRSNGDRNGDSYSRLGSFKTPRVPPSPRRFPRGGPPFDSGGRNRGGRGGHDALVGTTIK
VRQGPFKGYRGRVVDIKGQFVRVELESQMKVVTVDRSHISDNVVVSTPYRDIPRYGMGSE
TPMHPSRTPSRSGATPYPEGMRTPMRDRAWNPYAPMSPRNNWEDGNPGSWGTSPQYQPGS
PPSGTYEAPTPGSGWASTPGGNYSEAGTPRDSSSAYANAPSPYLPSTPGGQPMTPSSASY
LPGTPGGQLMTPGTNGLDMMSPVIGGDGEGPWFIPDILVTVHRTADESAVGVIREVLQDG
SCKIVLGAHGNGETITALPSEIEMVVPRKSDKIKILGGAHRGATGKLIGVDGTDGIVKLE
DTLDVKILDMVILAKLAQM
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atggcccgtcgaagagacgaagacgacgaccttgaagatgaagagtacgaggagcaggaa
gagcaactgattgatgatgaagaggaagaatatgaagaggaagaggaagaggatagagga
gcggccattaagaagagacggagatcagatttcattgatgatattgcggaggaggaggat
gaggaggaggaagatgatgacgatgatgaggattatggtggtggaggtggtggtggagct
ggaggtggtaggaagcagaagggcaagaagcggcgtggttctgagttttttgatgatatt
gcgcaagttgccagtgatgacgaagaagaagaagaagatgccgaggatgattttatagtc
gatgatcatggagctgatttacctgatgaggctggtggtagaaggatgcatcggccattg
ctgtcacgtgaggatgatcaagaagatgttgaagcgcttgagagaagtatccaagctaga
tatgcaaagtctatgcactcggaatatgatgaagagactacggaagtggagcaacaagct
ctattgccatccgttcgggatccaaaattatggatggtcaagtgtgcaattggccgggaa
cgggaaacggctgtttgtttgatgcaaaaatacattgataaaggatctgagttgcaaatt
cggtctgttgttgctcttgatcaccttaaaaactatatatatattgaagcagacaaagaa
gcccatgtgagagaggcttgcaaaggcttgcgcaatatttttgggcagaaaatcatgctt
gtccctatcagagaaatgactgatgttctttcagttgaaagcaaagtaattgatctttcc
agggacacatgggtcaggatgaagattgggacttacaaaggagaccttgccaaagttgta
gatgtagacaatgtgcggcagagagttacagtaaagttaattccaaggattgacttacag
gctcttgcaaacaaactggaaggcagagaagcaccaaagaagaaggcatttgtacctcct
ccacgttttatgaatgttgatgaggctagggaattacatattcgtgtcgagcgaagaaga
gatccgatgactggtgattattttgaaaatattggcgggatgctttttaaagatggtttc
ttgtataaaactgtatcaatgaagtcaattagtgctcagaacattaaaccatcatttgat
gaacttgagaagtttcgatcacctggagagaatggagatggtgatgttgccagtttgtca
accttgtttgcaaacagaaagaagggccattttatgaagggtgatgcagttattgttgtc
aagggagatctgaagaatctaaagggatgggttgagaaagttgatgaagaaaatgttcat
attagacctgaaatgaagggtcttccgagaacacttgcagtgaatgaaaaggaactatgc
aagtactttgaacctggcaatcacgtgaaggttgtttcaggcacacatgaaggtgtcacc
ggcatggttgttaaggttgagcagcatgtgctcattattctatctgatacaacaaaggaa
catatccgtgtatttgctgatgatgttgtggaaagttctgaggtaacgacaggtgttacc
aaaattggggactatgagcttcatgatcttgtactattggacaatatgagctttggttta
atcattcgtgtagaaagtgaagcctttcaggttctcaagggagttacagagaggcctgag
gttgcacttgttagactaagagagatcaagtgcaaaattgagaagaaaactaatgtgcaa
gatcggtacaagaacacggtatcggtgaaagatgttgttaggatcattgatggtccttgc
aaagggaaacaaggtcctgtagagcacatatatagaggagtcttgttcatctatgatcgg
catcaccttgagcatgctgggtatatttgtgctaaatcccactcatgtgttgtcattgga
ggatcacgttctaatggagatagaaatggtgattcctactcaaggttgggcagttttaaa
actccccgagtacccccttcaccaaggagatttcctagaggaggtcctccattcgactct
gggggaagaaatagaggtggaaggggagggcacgatgctttggttggtaccacaataaag
gtacgacagggacctttcaagggctaccgtggtcgtgttgtagatatcaaaggtcaattt
gttagagttgaattagaatcacaaatgaaggttgttacagttgatcggagccacatctcg
gataatgtggttgtttcaactccataccgtgatatacctcgatatggtatgggaagtgaa
accccaatgcatccttctcggactccatcgcgttcaggagcgacaccttatcctgagggc
atgaggacacctatgcgtgatcgagcctggaatccttatgcaccaatgagtccaaggaat
aattgggaagatgggaaccctggttcttggggaacaagtccgcagtatcagccaggaagc
cctccctctggaacatatgaagctccaactcctggttcaggctgggctagcactcctggt
ggtaattatagtgaagctggaacaccaagagatagcagttctgcatatgccaatgctcca
agcccgtacctgccatcaacacccggtggccagcctatgacacccagttcagcgtcctat
ctccccggcactcctggagggcagctaatgacacccggaactaatggtcttgatatgatg
tctcctgttataggtggagatggtgaaggaccatggttcataccagacatattggttact
gttcaccggactgcggatgaatctgctgttggtgtcatcagagaggtgcttcaggatggc
tcttgtaaaatagtccttggggctcatggcaatggagaaacgataactgctcttcctagt
gaaattgagatggtggtgccaaggaaatcagacaagatcaagatcctgggtggtgcacat
cgtggggctactggcaagttaattggcgttgatggcactgatggaattgtaaagttggag
gacactcttgatgttaagatattagacatggttatactggcaaaacttgcacaaatgtga
DBGET
integrated database retrieval system
