Populus euphratica (Euphrates poplar): 105142467
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Entry
105142467 CDS
T05872
Name
(RefSeq) uncharacterized protein LOC105142467 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
peu
Populus euphratica (Euphrates poplar)
Pathway
peu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
peu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105142467
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
peu03000
]
105142467
03019 Messenger RNA biogenesis [BR:
peu03019
]
105142467
04121 Ubiquitin system [BR:
peu04121
]
105142467
Enzymes [BR:
peu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
105142467
Transcription factors [BR:
peu03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
105142467
Messenger RNA biogenesis [BR:
peu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105142467
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105142467
Ubiquitin system [BR:
peu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
105142467
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
PcfJ
Baculo_IE-1
Nup35_RRM_2
FYVE
Rtf2
Motif
Other DBs
NCBI-GeneID:
105142467
NCBI-ProteinID:
XP_011048407
UniProt:
A0AAJ6VHB2
LinkDB
All DBs
Position
Unknown
AA seq
951 aa
AA seq
DB search
MSDKGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWNHIMEMADKDNSDGRCPACRIPY
DKEKIVGMASNCERLVAEMNSERKLKSHKGKPKTSEGRMHLSNVRVIQRNLVYIIGLPLN
IADESLLQRREYFGQYGKVLKVSISRTATGAIQHSANNSCCVYITYAKEDEAVRCIQSVH
SFVLEGRSLRACFGTTKYCHAWLKNMPCSIPDCLYLHDFGSEEDSFTKDDLVSAFTRSRV
QQIIGATNNLHRRSGNVLPPPADECTDRNISLTAKHDSKTSTQNKMNWDSSSCVESGAGR
SNTLHGAASWVTRVAGSLPPVTSFSSSGGTPNHKPGTSHGPCALASEVVSTKSSGDIKRT
ILEGSCEVNPVNLTLIDHLPCSPASQDSAGDAALPSAGTSPSKLTKPSCITSLDGDLQGL
CSGLSSICTDGNLKDEYREPVTSEIFISIHKPPKSQVSQQFVSEPLSESSFSPTLKECAI
VEDLLCFDDQEVQDFGSIHNQPPISSSPSSKQHLEQSWQQGKIHQCTVDVHPKILPPKHD
EVAFPFRSGNTVLSNGLHGRQANGLTEWDRSSNHSSVLLEIGPGKCLEEHGNMASGDCKL
DQDTDESSIISNILSMDSGVWEDSLTSPQNLVKFLADNDTQQSSLKRPCMRKPQESSQSR
FSFARQDGFSNHLSNFEHSFENATNKSPVSNHIIENKEPWMDHYRSISSNITSVESNGFL
SKHPFTSSSFSVSKTSTSPPPGFSVPSRAVPPGFLTHGAVHYDFDHSANHFLQNSAPLSR
NIGISGDVEFIDPAIMEGGKGFLSARLSNPGFDAKPACPPQFSPFDHDSELQMLMRQSIS
AQQNPRLSDQLRNRFSPPDDAYTISPMFLGQSPPNKLSSFTQLTAQQLRNMHMSNGSLGG
GWNEVKNVSDPCLPEFLGNGGLGFSKFVPSYEDLKYQMSGSSNLYNRGFAM
NT seq
2856 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacaagggagagaagacatgcccattgtgtgctgaggagatggatttgacggat
cagcaattgaagccatgcaaatgtggttatgagatctgtgtttggtgctggaaccacatt
atggaaatggctgacaaggataattctgatggtcgctgcccagcttgtcgtataccatac
gacaaggaaaagatagtggggatggcatcaaactgtgaaaggctagtggctgaaatgaat
tcagagcgaaaactgaagtcccataaagggaagccaaaaacatctgaagggaggatgcat
ctaagcaatgttagagtcattcaacggaatctagtgtatataattggattacctctcaat
attgcagatgaatcccttcttcagcgaagagagtattttggccaatatggaaaggttctg
aaggtgtctatttctcgaactgcaacaggggcgattcaacattctgcaaacaacagctgt
tgtgtgtatataacatatgcaaaagaggacgaagcagttcgttgtattcaatcagtgcac
agttttgtcttagaaggtagatccttgagggcatgttttggaacgacaaaatattgccat
gcatggctgaaaaatatgccttgcagcattccggactgtttatatttgcatgattttggc
tctgaggaagatagttttacaaaagatgatttagtttcagcctttacaaggagtagagta
caacaaattattggtgctacaaataatttgcatcggcgttcaggaaatgttttgccaccc
ccagcagatgagtgcactgataggaacatatcattgacagccaaacatgattccaaaact
tctacccagaataaaatgaactgggatagcagttcatgtgtggaaagtggtgctggaaga
tccaatacactacatggggcagcttcatgggtgacacgtgtcgctggcagtttgccacca
gttacaagtttttcatcgtcaggtggaactcccaatcataaacctggaacatcacatggt
ccctgtgctcttgcatcagaagttgtgagcaccaaaagttctggtgacataaaaagaacc
atacttgaaggaagctgtgaagtgaatcctgtcaatttaacattaattgaccatttacct
tgttctccagcatctcaggacagtgctggagatgctgcattgccatcagctggaacaagc
ccttcaaaactcaccaaaccatcatgtattaccagtctggatggggatcttcagggactg
tgttctgggttatcgtcaatttgtactgatggtaaccttaaggatgagtaccgtgaacct
gttacttcagaaatttttatttctattcacaaaccgcccaaaagtcaagtctcacaacaa
tttgttagtgagccacttagcgagtcttcattctcgccaacactgaaagaatgtgctatt
gttgaggatttactctgttttgatgatcaggaagtccaggactttggaagcatccataat
caaccacccatatcatcctcaccttcttcaaagcagcatttggaacagtcctggcagcaa
ggcaagattcatcaatgcactgttgatgtacatccaaagattcttccccctaagcatgac
gaggttgcttttccattcagatcaggcaacacagttttgtcaaacggattgcatggcaga
caagctaatggccttaccgagtgggatagatcttctaaccattctagtgtcttgttagag
ataggaccagggaagtgcttggaagaacatggtaatatggccagtggtgactgtaaactt
gatcaagatacagatgagagcagcattatctcaaatattttatccatggattctggtgtg
tgggaagattcattgacatcacctcagaatttagttaagttcctggctgataatgataca
caacaaagttccctcaaaagaccatgcatgcgaaaaccacaggagagtagtcaatcaagg
ttctcatttgccaggcaggatggtttctccaatcatttgtctaattttgaacattctttt
gaaaatgcaacaaataagtctcccgtctcaaatcatattattgaaaacaaggaaccttgg
atggaccattaccgtagtatctcttcaaatattacttctgtggaatcaaatggttttctc
agcaagcatccttttacatcttctagcttttctgtttccaaaacttccacttctccccct
ccaggattctcggtgccaagcagagctgtgcctccaggctttcttactcatggggcagta
cactatgattttgaccattctgcaaatcattttctacaaaactctgctccactatctagg
aatattggcatctccggggatgttgaatttattgatcctgcaataatggaaggtgggaaa
ggatttctgtcagcaaggctgagtaatccaggctttgatgcaaaaccagcttgccccccc
cagtttagtccttttgatcatgattcagagcttcaaatgctgatgcggcaatcaatttct
gctcagcagaaccccaggttgtcagatcagttaaggaatagattctctccaccagatgat
gcttacaccatttcacctatgtttcttggtcaatctccacccaacaaattatcatcattt
acacaattgacagctcaacagcttaggaatatgcacatgtcaaatggcagtttgggtggt
ggttggaatgaggtaaaaaacgtcagtgatccttgtttgccagaattcctgggaaatgga
gggttgggatttagcaaatttgttcctagctatgaggatttgaagtatcaaatgtctggt
tccagcaatctatacaacagaggatttgcaatgtga
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integrated database retrieval system
