Pedobacter sp. D749: KYH19_02715
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Entry
KYH19_02715 CDS
T10701
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pev Pedobacter sp. D749
Pathway
pev03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pev00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KYH19_02715 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pev03021
]
KYH19_02715 (rpoC)
03400 DNA repair and recombination proteins [BR:
pev03400
]
KYH19_02715 (rpoC)
Enzymes [BR:
pev01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KYH19_02715 (rpoC)
Transcription machinery [BR:
pev03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KYH19_02715 (rpoC)
DNA repair and recombination proteins [BR:
pev03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KYH19_02715 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
QXU42529
LinkDB
All DBs
Position
660789..665075
Genome browser
AA seq
1428 aa
AA seq
DB search
MSYKKDNKLKSNFTSITISLSSPEIILERSSGEVLKPETINYRTYKPERDGLFCERIFGP
VKDYECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHIALVVPVAHIWYFRSLPNKI
GYLLGLPTKKLDLIIYYERYVVIQSGLMAEEGINYMDFLTEEEYLDILDKLPKENQYLDD
KDPNKFIAKMGAEALEDLLKRIDLDTLSYDLRHQAANETSQQRKNEALKRLQVVEAFRGA
NTRIENRPEWMIVKIVPVIPPELRPLVPLEGGRFATSDLNDLYRRVIIRNNRLKRLIEIK
APEVILRNEKRMLQEAVDSLFDNSRKVNAVKTEGNRALKSLSDILKGKQGRFRQNLLGKR
VDYSARSVIVVGPSLKLHECGIPKDMAAELYKPFIIRKMIERGVVKTVKSAKKIVDRKDP
LVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDGDQM
AVHLPLGNAAILEAQVLMLAAHNILNPANGTPITVPSQDMVLGLYYITKGRRTDETRVVK
GQDSNFYSPEEVIIAYNEKELDLHAFIKVRVNVKQNDGSIVNKLTETTVGRVLFNQMVPE
EVGYINELLTKKSLRDIIGEVVKMTGMARASQFLDDIKELGFRMAFQGGLSFNLQDVNIP
VEKHTLLEQAAAEVEEVRNNYNMGFITNNERYNQIIDIWTRINNRLTTFVMTQLSSDNQG
FNSVYMMLDSGARGSKEQIRQLCGMRGLMAKPQKSGSGGDIIENPILSNFKEGLSVLEYF
ISTHGARKGLADTALKTADAGYLTRRLHDVAQDMIVNSVDCGTLRGMYTTALKDQEDIVE
PLYDRILGRTSLHDVYNPLDNTLLVSAGEDINEDVAKLIEESPLEGIEIRSVLTCENKRG
VCALCYGRNLASGKRVQRGEAVGVIAAQSIGEPGTQLTLRTFHVGGTASNIAAESNIVAK
FDGVIEFENIRTVDTQTEEGTVQVVLGRSGEFKIVEPGTGRIIVTNNIPYGAFLFVKEGD
KLTKGDKICSWDPYNAVILSEFAGKAQFDAIIEGVTFREESDEQTGHREKVIIDTRDKTK
NPSVQIVDKKGEFIKGYNIPVGAHVSVDEGEAIQTGQIIAKIPRATGKTRDITGGLPRVT
ELFEARNPSNPAVVTEIDGVVTLGGVKRGNREITIESKDGEVKKYLVPLSKHILVQDNDF
VKAGMPLSDGSISPADILSIKGPAAVQEYLVNGIQEVYRLQGVKINDKHFEVIVHQMMQK
VHIEDPGDTIFLENNAVDRWDFADENDAMYDKKVVEDAGDSTEIKPGQIVSLRKLRDENS
QLKRKDLKQITVRDARPATASSILQGITRASLGTKSFISAASFQETTKVLNEAAIAGKRD
NMLGLKENVIVGHLIPSGTGVRGYERIIVGSQEEYDKLLASKQEEVEA
NT seq
4287 nt
NT seq
+upstream
nt +downstream
nt
atgtcttacaaaaaggataataaattaaaaagcaatttcacatcaatcacgattagctta
tcgtctccagaaattattttggaacgctcaagcggtgaggtgttgaaaccagaaaccatt
aactaccgtacttacaaacctgagcgtgatggtttgttctgtgagcgtatttttggtccg
gtaaaagattacgaatgtcattgcggtaaatacaaacgtatccgttataaaggtattgtt
tgcgatcgttgtggcgttgaagtaacggagaaaaaagtacgtcgtgagcgtatgggacac
attgctttagtggttcctgttgcacacatctggtacttccgctctttaccaaacaaaatc
ggttatttattaggtttacctactaaaaaattagatttaattatctattacgagcgttac
gtagttattcaatcaggcttaatggctgaagaaggtatcaactatatggacttcttaacg
gaagaagaatatttagatatcttagataaattacctaaagaaaaccaatacttagatgat
aaagatcctaataaattcatcgccaaaatgggtgctgaagcattagaagatttattaaaa
cgtattgatttagatactttatcttatgatttacgtcaccaggcagctaacgaaacttct
cagcaacgtaaaaatgaggctttaaaacgtcttcaggttgttgaagctttccgtggtgct
aatacacgtattgagaatcgccctgagtggatgattgttaaaatcgttccggttattcca
ccagaactacgtccgttagtgccattagaaggtggtcgtttcgctacttccgatttaaat
gatttataccgtcgtgtaattatccgtaacaaccgtttaaaacgtttgatcgagattaaa
gcaccagaggtaattttacgtaacgagaaacgtatgttgcaggaagctgtagattcgtta
ttcgataactcacgtaaagttaacgcggtaaaaactgaaggtaaccgtgctttgaaatca
ctttcagatatcctgaaaggtaaacaaggtcgtttccgtcagaatttattaggtaaacgt
gtggattattcagctcgttcggtaattgttgtagggcctagccttaaattacacgagtgc
ggtattcctaaagatatggctgctgagctttacaaaccgttcattattcgtaagatgatt
gagcgtggtgtggtaaaaacagttaaatctgctaagaaaatcgttgatagaaaagatcca
ttagtttgggatatcttagaaaatgtattaaaaggtcacccggtattattaaaccgtgca
cctacgctacacagactaggtattcaggctttccagccaaaattaattgaaggaaaagca
atccagttacacccgttagtttgtactgcattcaacgccgattttgatggtgaccagatg
gctgtccacttacctttaggtaacgcagcaattttggaagcccaggtattgatgttggcc
gcacataacatcttaaaccctgcaaatggtacgccaattacagtaccatcacaggatatg
gttttgggtctttactatattactaaaggccgtagaacagatgaaaccagagttgtaaaa
ggacaggattcgaatttctattctccggaagaagttattattgcttataacgagaaagaa
ttagacttgcatgcatttatcaaagtaagggtaaatgtgaagcaaaatgatggatcgatc
gttaataaattaactgaaacaacagttggtagagtattattcaaccaaatggttcctgaa
gaagttggttatatcaatgagttattaactaaaaaatcgttaagagatattatcggtgag
gtagttaaaatgactggtatggcacgtgcttctcagttcttagatgatatcaaagaatta
ggattccgtatggcattccagggaggtttatcgttcaacttacaagacgtaaacattccg
gtagaaaaacatactttattagaacaggcagctgcagaagttgaagaggtaagaaacaac
tataacatgggtttcattaccaacaacgagcgttacaaccagattatcgatatctggacc
cgtatcaacaacaggttaactactttcgttatgactcagttatcttcagataaccaaggt
tttaactcagtttacatgatgcttgattcaggtgcacgtggatctaaagagcagattcgt
cagctttgcggaatgcgtggtttgatggcgaaacctcaaaaatctggttcaggtggtgat
atcattgaaaacccgatcttatcaaactttaaagaaggcttatcggtattagagtacttt
atctctactcacggtgcgcgtaaaggtttggcagatacggcgttaaaaacagctgatgcg
ggttacttaacccgtcgtttacatgatgttgcacaggatatgattgttaactcagttgat
tgtggtactttaagaggtatgtacacaactgcgttgaaagatcaggaagatattgttgag
ccattatacgacaggattttaggccgtacttcattacatgatgtttataatcctttggat
aacacattgttagtaagtgcaggcgaagatatcaacgaagatgttgctaaactgatcgaa
gagtctccattagaaggtatcgaaatccgttcggtattaacttgtgagaacaaacgtggt
gtttgcgcattatgttacggtcgtaacctggcatctggtaaacgtgttcaaagaggtgag
gcagttggtgtaattgcagcacaatcaatcggtgagccgggtacacagttaacacttcgt
actttccacgtgggtggtactgcatcaaacattgctgcagaatctaacatcgtagctaag
tttgatggtgtaatcgaattcgaaaatatccgtactgtagatacacaaacagaagaagga
acagttcaggtagtattaggtcgttcaggtgagttcaaaattgttgaaccaggaaccgga
cgtatcattgtaaccaacaacattccttacggtgcattcttgttcgtaaaagaaggtgat
aaacttactaaaggtgataaaatctgttcatgggatccgtacaacgcggttattctatca
gaatttgccggtaaagcacaatttgatgccattattgaaggtgtaaccttccgtgaagaa
tcagatgagcaaactggtcaccgtgaaaaagtaattatcgatacacgtgataaaacgaaa
aacccttcagttcagatcgttgataagaaaggtgaattcatcaaaggttataacattccg
gtaggagcccacgtttcagttgatgaaggtgaagccatccaaactggtcagattatcgct
aagattcctcgtgcaactggtaaaacccgggatattacaggtggtttacctcgtgtaacc
gaattatttgaagcacgtaacccatctaacccagctgtagtaactgagattgatggtgtg
gtaactttaggtggcgttaaacgtggtaaccgtgagatcacaatcgaatcaaaagatggt
gaagttaaaaaatacctggttccattgtctaaacacatccttgtacaggataatgacttt
gtgaaagcaggtatgccgttatcagatggttcaatttctcctgcggatatcttatcaatt
aaaggccctgcagcggttcaggaatacttagtaaatggtattcaagaggtttaccgttta
caaggtgtgaaaattaacgataagcacttcgaggtaattgttcaccagatgatgcagaaa
gttcacattgaagatccgggtgatactattttcttagaaaacaatgctgttgaccgttgg
gattttgccgacgagaacgatgcgatgtacgacaagaaagtggttgaagatgcaggtgat
tcgacagaaatcaaaccaggtcaaattgtttcattacgtaaattaagagatgaaaattct
caattaaaacgtaaagatttaaaacagatcacggttagagatgcaagaccagcaactgca
agttctatcttacaaggtattacacgtgcgtcattaggtactaaatcgttcatttctgcg
gcttcgttccaggaaactacgaaagtattaaatgaggcagctattgcaggtaaacgcgat
aatatgttaggcttgaaagaaaacgtgatcgttggtcacttaatcccttcaggtactggt
gtacgtggttacgaaagaatcatcgttggttctcaggaagaatacgataaattattagct
tcgaaacaagaagaagtagaagcttaa
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integrated database retrieval system
