Pedobacter sp. D749: KYH19_06970
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Entry
KYH19_06970 CDS
T10701
Name
(GenBank) GIY-YIG nuclease family protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
pev Pedobacter sp. D749
Pathway
pev03030
DNA replication
pev03430
Mismatch repair
pev03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pev00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KYH19_06970
03430 Mismatch repair
KYH19_06970
03440 Homologous recombination
KYH19_06970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pev03032
]
KYH19_06970
03400 DNA repair and recombination proteins [BR:
pev03400
]
KYH19_06970
Enzymes [BR:
pev01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
KYH19_06970
DNA replication proteins [BR:
pev03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
KYH19_06970
DNA repair and recombination proteins [BR:
pev03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
KYH19_06970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
DEDDh_C
DUF7508
GIY_YIG_2
DNA_pol_A_exo1
Motif
Other DBs
NCBI-ProteinID:
QXU43320
LinkDB
All DBs
Position
complement(1750102..1751475)
Genome browser
AA seq
457 aa
AA seq
DB search
MLYAVVDIETTGGHASANGITEVAINIHDGNKIVESYTTLINPKQPVPDYITALTGIDDG
MLMDAPAFDDVALQIYELLSDKVFVAHNVNFDYSFLKHHLAASGYDLQCKKLCTVRLSRK
LIPGKSSYSLGKLCTALQIPIQNRHRAAGDADATSILFNLLLEYDQEGIIAEMLKKTSKE
QVLPPHLDKASILRLPSQPGVYYFKDSKGKIIYVGKAKDLKKRVTSHFTGNTPNRQRQDF
LRTIHHVDYVTCGTELMALILEANEIKRLWPENNRAMKRYEHKYDLYVFEDQNGYLRLAI
DKHKKNNNALQSFNSLLEGYNFLNQLVNKYQLCAKLCYLQKTATKCYAHENGQCFGACSG
IETVAVYNKKLNAALIDVQNQQPSFALVDEGRKEEEFSCLVVENGKFYGMGYFTDKNYLS
DGLAPIKNDLSTYQSNSYILNLILNYAEQHPQKLYKL
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgttatacgcagttgtagatatcgaaaccactggtggtcatgcctcagcaaatggcatt
accgaggttgctattaacattcatgatggcaacaaaatcgttgaatcttacactaccctc
attaatcctaaacagcctgtacccgattacattaccgcacttaccggtattgatgatggc
atgttgatggatgcaccagcttttgatgacgttgctttacaaatctatgaactcttaagc
gataaggtttttgtagcacacaatgtaaacttcgattattcctttttgaagcatcatctg
gcagcctcaggatatgatttacaatgcaaaaaactttgtacggtacgcttaagcagaaaa
ctaattcctggtaaatcatcttatagtttagggaaactttgtaccgccttgcagataccg
attcagaaccggcacagggcagcaggagatgcagacgctaccagtatcctattcaattta
ttactggagtatgatcaggaaggcattatagcagaaatgctgaagaaaacttcaaaagag
caggttttaccgccgcacttagataaagcttctattttgaggttgcccagccagcctggc
gtatattattttaaggacagcaaaggcaaaattatttatgttggaaaagctaaagacctt
aagaaacgtgtaaccagtcattttaccggtaatacacccaaccgccagcgccaggatttt
ttacgcaccatccatcatgtagactatgtaacatgcggcaccgaactcatggctttaatt
ttagaagccaatgaaattaagcgcttatggcccgaaaataaccgtgcaatgaaacgttat
gagcataaatatgatttatatgttttcgaagatcaaaacggttatttacgtttagcaata
gataaacataagaagaacaataatgccctgcaaagttttaacagtttattggaaggttat
aatttcttaaatcaactggttaataaataccagctttgtgcaaagctctgttatttacaa
aaaacagctacaaaatgttatgcgcacgaaaatggccagtgttttggcgcctgcagtgga
atagaaactgtagccgtttacaacaaaaaactaaatgctgcattaattgatgttcagaat
cagcaaccaagtttcgcattggtagatgaaggccgaaaagaggaagaatttagttgcctg
gtagtagaaaacgggaaattttatggaatgggttattttacagacaaaaattacttgtcg
gatggattagctccaatcaaaaatgatctttctacctatcaatccaatagttatatttta
aatttaattctgaattacgcagagcaacatccacagaaattgtataaattgtag
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