Pedobacter sp. D749: KYH19_08540
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Entry
KYH19_08540 CDS
T10701
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pev Pedobacter sp. D749
Pathway
pev03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pev00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
KYH19_08540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pev03400
]
KYH19_08540
Enzymes [BR:
pev01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
KYH19_08540
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
KYH19_08540
DNA repair and recombination proteins [BR:
pev03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
KYH19_08540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
NFACT_N
HIT
Ribosomal_S13
Motif
Other DBs
NCBI-ProteinID:
QXU43613
LinkDB
All DBs
Position
2142892..2143665
Genome browser
AA seq
257 aa
AA seq
DB search
MAELPDLEVFAQIISRRFKGKTLEELEVKVAKKLNVTAAQLKAKLEGKKLSKVLRYGKTL
HFHFNKEVLQVHLMLRGKLEALKKDSELPKYTILAFHFSGGEGFVVVDMLRAATPTLNPD
AAKAPDALEMDEDYFAGMLFKSKKMVKEVLMDQKKMRGIGNSYADEILWDAGVSPFSVSS
AIPEKIVKKLFMSLEAVLKEAIAAIAKENGDELRGELRDFMKVHSAKIEKSPSGAALKSE
KIGGRTSYYTDEQKLYS
NT seq
774 nt
NT seq
+upstream
nt +downstream
nt
atggctgaactaccggacctggaagtatttgcgcagatcatctcgcgccggttcaaggga
aagaccctggaagagttggaagtgaaagtggcaaaaaagctgaacgtgactgccgcgcag
ctcaaggcaaaactcgaaggaaaaaagctttcgaaggttttgcgctatggaaaaactttg
cactttcatttcaataaggaagttttacaggttcatctcatgcttcggggaaaactggag
gcattgaagaaagattcggagcttccgaaatacaccatccttgcttttcatttttccgga
ggagagggctttgtggtcgtagatatgttgcgtgcggcaacacctaccttaaaccccgac
gcggccaaggcaccagatgcgctggaaatggacgaggattattttgccggaatgcttttc
aagagcaagaaaatggttaaggaggtgctgatggaccagaaaaagatgcggggaatcggt
aattcatatgctgatgaaatcctttgggatgccggggtatccccgttttcggttagctct
gccataccggaaaaaatcgtaaagaaattgttcatgagcctggaggctgttttgaaagaa
gccattgccgctatcgcaaaagagaatggagatgagcttcgcggcgagctgcgtgacttc
atgaaggtgcatagcgcaaagattgagaagtcgccgtccggagcggccctgaagtctgaa
aagattggcggaaggaccagttattataccgacgaacagaaattatattcctga
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integrated database retrieval system
