Pedobacter sp. D749: KYH19_09230
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Entry
KYH19_09230 CDS
T10701
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pev Pedobacter sp. D749
Pathway
pev03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pev00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KYH19_09230 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pev03019
]
KYH19_09230 (pnp)
03016 Transfer RNA biogenesis [BR:
pev03016
]
KYH19_09230 (pnp)
Enzymes [BR:
pev01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
KYH19_09230 (pnp)
Messenger RNA biogenesis [BR:
pev03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
KYH19_09230 (pnp)
Transfer RNA biogenesis [BR:
pev03016
]
Prokaryotic type
tRNA degradation factors
KYH19_09230 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
KH-I_KHDC4-BBP
S1_RRP5
HutF_N
Vip3A_N
Motif
Other DBs
NCBI-ProteinID:
QXU43744
LinkDB
All DBs
Position
2302676..2304811
Genome browser
AA seq
711 aa
AA seq
DB search
MNVIKKSFDLGDGRIVEIETGKLAKQADGSVVVKMGDTMLLATVVSTVGAKPGTDFLPLS
VDYQEKYAATGRIPGGFLRREARLSDYEVLISRLVDRALRPMFPSDYHSDTQVMISLISA
DKDIMPDCLAGLAASAALSVSDIPFNGPISEVRVAKIDGKLIINPKASELERATLEFMVA
GSANDIGMVEGECDEIQEDEMVEALKFAHDAIKVQCAIQVELTEATGKTVKREYNHEDHD
ADLKAKVYADTYDKVYAVAKAGGNKDVRKEGFTAIINEFFEAMPEDTADLTKAMAKHYYH
DVQYDAIRNLLLDEGIRLDGRKTTEIRPIWSEVGYLPAAHGSAVFTRGETQSLTSVTLGS
KDDEQMIDGAFFNGYNKFLLHYNFPGFSTGEVRPNRGAGRREIGHGALAQRSLKKVLPQG
EANPYTIRIVSDILESNGSSSMATVCAGTLALMDAGIKIKSPVSGIAMGLITDEKTGKYA
ILSDILGDEDHLGDMDFKVTGTEHGIVACQMDLKINGLSYEVLTKALLQAKEGRLHILNE
MKKTISSPNEDYKPHAPRIVSLTIDKEFIGAIIGPGGKIIQEMQRETGASISIEEVDGKG
IVEVFADNKAAIDAAVTRIRNIVAKPEIGEVYQGKVKSIMPFGAFVEVMPGKDGLLHISE
ISWERLETMDGVLKEGDKIEVKLLDIDKQGKMKLSRKVLLPRPEKPAAPQA
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgaatgtaataaaaaaatcgttcgatttgggcgatggcagaattgtagaaattgaaact
ggtaaactggctaaacaggctgatggttcggttgtagttaaaatgggcgatacgatgttg
ttagcaacagttgtatctactgttggtgctaaaccaggtactgattttttaccattatcg
gttgattatcaggagaaatacgcggctacaggccgtattccgggaggctttttacgtcgt
gaagcaagattatctgattacgaagtattaatctctcgtttagtagatagagctttacgc
ccaatgtttccaagtgattatcactctgatacacaggtaatgatttctttaatctctgct
gataaagatattatgccagactgtttggcaggtttagcggcatctgctgcattatcagtt
tctgatattcctttcaacggtccgatttctgaagtacgtgtggctaaaattgatggtaaa
ctaattatcaatcctaaagccagcgaattagaacgcgcaactttagagtttatggttgct
ggttcagctaacgatataggcatggttgaaggtgagtgtgatgaaattcaggaagacgaa
atggttgaggctttaaaatttgcacacgatgcaattaaagttcaatgtgctattcaggtt
gaattaacagaggcgacaggcaaaacggttaaacgtgaatataaccacgaagatcatgat
gctgatttaaaagctaaagtttatgctgatacttacgataaagtttatgctgtagcaaaa
gctggtggcaataaagatgttcgtaaagaaggtttcactgcaatcattaacgaattcttt
gaagcaatgccagaagatactgcagatttaactaaagcaatggctaaacattattaccat
gatgttcagtacgatgcgatcagaaatttattgttagatgaaggtatccgtttagatggt
cgtaagactacagaaatccgtcctatctggagtgaagttggttatttacctgctgctcac
ggttcggctgtatttacacgtggcgaaactcaatctttgacatcggttactttaggtagt
aaagatgatgaacaaatgattgatggtgctttctttaatggttacaacaaattcttattg
cactataatttccctggtttctcaactggtgaggttagaccaaacagaggcgctggccgt
cgtgaaattggtcacggtgctttagcacaacgttcattgaaaaaagtattgcctcaaggt
gaagctaatccttataccatccgtattgtttctgatattttagaatctaacggttcttcg
tcaatggcaactgtttgtgctggtacattagcattaatggatgctggtattaaaatcaaa
tctccggtttctggtatcgcaatgggtttaattaccgatgagaaaactggtaaatatgca
atcctttctgatattttaggtgatgaagatcacttaggtgatatggactttaaagtaacc
ggtactgaacatggtatcgttgcttgtcaaatggatttaaaaatcaatggtttatcttac
gaagttttaactaaagctttgttacaggctaaagaaggtcgtttacacatcttaaacgag
atgaagaaaaccatcagctcacctaacgaagattacaaaccgcacgctccacgtattgtt
tctttaacaattgataaagaatttatcggtgcaattatcggccctggaggtaaaattatc
caggaaatgcaacgcgaaaccggtgcatcaatctctatcgaagaagttgatggtaaaggc
attgtagaagtatttgcagataacaaagcggctatcgatgcagcagttacccgtatccgt
aatattgtagctaaaccagaaatcggcgaagtttaccagggtaaggtaaaatcgattatg
ccattcggtgcatttgttgaggttatgccaggtaaagatggtttattacacatctctgaa
atttcatgggaacgtttagaaaccatggatggtgtattaaaagaaggtgataaaatcgaa
gttaaattgttagacatcgataaacaaggtaaaatgaaactttcccgcaaagttttattg
ccaagaccagaaaaaccagctgcgccacaagcgtaa
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