Pedobacter sp. D749: KYH19_10815
Help
Entry
KYH19_10815 CDS
T10701
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
pev Pedobacter sp. D749
Pathway
pev02020
Two-component system
pev02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pev00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
KYH19_10815 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
KYH19_10815 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pev03021
]
KYH19_10815 (rpoN)
Transcription machinery [BR:
pev03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
KYH19_10815 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
GET4
DUF1216
HTH_12
MarR
DUF4158
LacI
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
QXU44047
LinkDB
All DBs
Position
2679822..2681294
Genome browser
AA seq
490 aa
AA seq
DB search
MLKQHLQQKLLQKLSPQQIQFIKLLQVPTVALDTRVKEELEENPALEDPSLMTQDEPKSE
YDDLNDGPEDYEQPSEDTSMDEFNVDDYLQDDSTNDYSTNYNNGDDDEEKKETPIAIEST
FFESLQEQLDLIPLSDQDFIIGKQIIGSLDDDGYLRRPLGSMIDDLAFSQNVIVEEEDVL
EMLKLIQSFDPPGIGARDLKECLLIQLKRKDPNNPIIVKAMNVVENYLDEFTRKHYDKLE
KSLGLDSEELKEVVNEILRLNPKPGDANQVTTKQMQIIPDFHISNNDGILILTLNSKNAP
ELKVSRSYQEMFEHYDKAASKDKKLKEAVQFVKQKLDSARWFIDAIKQRQQTLLKTMNAI
MHYQYEYFLTADERKMRPMILKDIADKIDMDISTVSRVANSKYVQTEFGTFLLKSFFSEA
IQTENGEEVSNKEVKKILEDCIGNEDKRKPLADEKLTEILKERGYNIARRTVAKYREQMN
IPVARLRKEL
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgctaaaacaacacctacaacaaaaattattacaaaagttatcaccacaacaaatacag
tttattaaattgttgcaggtaccaaccgttgctttagatacccgtgtaaaagaagaactc
gaagaaaacccagcgcttgaagatccaagcttaatgactcaggatgagccaaagagtgaa
tatgatgatttaaatgatggacctgaagattacgaacaaccatcagaagataccagcatg
gatgagtttaatgtagatgactatctacaggatgattcgaccaacgattacagcaccaac
tacaataatggcgacgacgatgaggagaaaaaagaaacgccaatagctatagaaagtaca
ttttttgaaagtttacaagagcaattagaccttattcccctatccgatcaggattttatt
atcggcaaacagattattggcagtttagatgatgatggttatttacgccgtccgttgggc
tccatgatcgatgaccttgctttttctcagaatgttattgttgaggaagaggatgtattg
gaaatgttaaaactgatccaaagcttcgatcctccgggcattggcgcaagagacctgaaa
gaatgtttactgatccagttaaaaagaaaagatccgaacaatcccattatagttaaagca
atgaatgttgtagaaaactatctggatgaatttacacgcaaacactacgataaattagaa
aaaagtttaggcttggatagcgaagagcttaaagaggtggtaaatgaaattttacgttta
aatccgaaaccaggtgatgccaatcaggttacgactaaacaaatgcagattattcctgat
ttccacatcagcaataacgatggcatattaattttgactttaaattcgaaaaatgctcca
gaattaaaggtaagcagatcttaccaggaaatgtttgagcattacgacaaggctgcatct
aaagataaaaagctaaaagaggctgttcagtttgttaaacaaaaattagattccgcccga
tggtttatagatgcgattaaacaaagacaacaaactttgttaaaaacgatgaatgccatt
atgcactatcaatacgaatattttttaacggctgatgagcgtaaaatgcgcccgatgatc
ttaaaagatattgcagataaaatcgatatggatatctcaaccgtatccagggtggccaac
tctaaatatgtacaaaccgaatttggcacattcctgttaaaatctttcttctcagaagct
atacagactgaaaacggtgaagaagtttctaataaagaagtaaaaaagattttagaagat
tgcattggcaatgaagataagcgcaaacctttggcagatgaaaaactaaccgaaatttta
aaagaaagaggttacaacattgccagaagaacggttgcgaaatatcgtgaacaaatgaat
attccggtagcaaggctgaggaaagaactttag
DBGET
integrated database retrieval system
