Pedobacter sp. D749: KYH19_15535
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Entry
KYH19_15535 CDS
T10701
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pev Pedobacter sp. D749
Pathway
pev03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pev00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KYH19_15535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pev03019
]
KYH19_15535
Enzymes [BR:
pev01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KYH19_15535
Messenger RNA biogenesis [BR:
pev03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KYH19_15535
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Cas3-like_C_2
UvrD-helicase
ssDNA-exonuc_C
SUa-2TM
P-loop_SecA
AAA_19
Motif
Other DBs
NCBI-ProteinID:
QXU40413
LinkDB
All DBs
Position
3869806..3871110
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AA seq
434 aa
AA seq
DB search
MLFKELNLIEPILKALETEGYTQPTPIQEQSIPTILKGKDLLGCAQTGTGKTAAFAIPML
QLLHEKHVNTKATKNIKALILTPTRELAIQIEESFKAYGRHLNLRHLVIFGGVNQHSQVE
ALRKGVDILVATPGRLLDLMNQGFISLNTIELFVLDEADRMLDMGFIHDVKKVVAKLPAK
RQTLFFSATMPDEIQKLANTILSSPTKVEVTPISSTAETIVQSVYFVDKPDKKKLLIHLL
EDKNIQTALVFTRTKHGADRIVKDLAHAGIKSAAIHGNKSQNARQRALTDFKDRKIRVLV
ATDIAARGIDIDQLSHVINFELPNIPESYVHRIGRTGRAGANGIAISFCDAEENEYLLDI
QKLIKITLPVVDDHPYPLSWESMLAKNQVKRKPQAQSKGGGGGAKKSGDGNMSGKPRNAS
NNRRFGGNRKRGER
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgttattcaaagaattaaacctcattgagcccattttaaaggcccttgagaccgaaggt
tatacacaaccaacaccaatacaggagcaatctattccaaccatcttaaaaggcaaagat
ttactaggctgtgcacaaacaggtaccggaaaaaccgctgcctttgccatcccgatgttg
cagttactgcacgaaaaacacgtcaataccaaagcaacaaaaaacataaaggctttaatt
ttaacacctacacgcgagcttgccattcagattgaagaaagctttaaagcttatggccgt
catttaaacttacgccatctggtaatttttggcggagtgaaccaacactcgcaggtagaa
gcattaagaaaaggcgttgatattttagtggcaacacctggtcgtttattagacttaatg
aaccagggtttcattagcttaaataccattgaacttttcgtactggatgaggccgatcgt
atgctggatatgggctttattcacgacgtgaaaaaagtagtagctaaattaccagctaaa
cgtcagactttatttttctcggcaaccatgccagatgaaatccagaagttggcgaatacc
attttatctagtcccacaaaagtagaggttactccaatttcttcaactgcagaaacgatt
gttcaatccgtttattttgttgataaaccagataagaaaaagttattgatccatcttctt
gaagataaaaatattcagacagccctggtttttacccgtaccaaacatggtgcagaccgt
attgttaaggatttagcccatgcagggattaaatctgctgctatccatggcaataaatcg
caaaatgcccgtcaaagagcattaactgattttaaagatagaaaaatccgtgttttagtt
gctacagacatcgctgcccgcgggattgatatcgatcagctatcacatgtgatcaatttc
gaattaccaaacattcctgaatcttatgttcacagaattggccgtaccggccgtgccggt
gcaaacggtattgcgatttctttctgcgatgcggaagaaaacgaatacttattggatatt
cagaaactgattaaaattactttacccgttgttgatgatcacccttacccattaagttgg
gaaagtatgttggccaaaaaccaggttaaacgcaaaccacaagcccaatctaaaggtggt
ggcggtggcgctaaaaaaagtggcgatggcaatatgagtggcaaaccacgtaatgccagc
aacaacaggaggtttggtgggaatagaaaaagaggagaaagatag
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