Pedobacter sp. D749: KYH19_23890
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Entry
KYH19_23890 CDS
T10701
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pev Pedobacter sp. D749
Pathway
pev03410
Base excision repair
pev03430
Mismatch repair
pev03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pev00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
KYH19_23890 (recJ)
03430 Mismatch repair
KYH19_23890 (recJ)
03440 Homologous recombination
KYH19_23890 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pev03400
]
KYH19_23890 (recJ)
DNA repair and recombination proteins [BR:
pev03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
KYH19_23890 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
KYH19_23890 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KYH19_23890 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
QXU41984
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All DBs
Position
5803538..5805238
Genome browser
AA seq
566 aa
AA seq
DB search
MEKRWVLASDCNDDTVAKIAEQLNIDRSLAQILVQRNICDFDQAKDFFRPDLHHLHDPFL
MKDMDVAIARIETALATHEKILIYGDYDVDGTTSVALAFSFFSQLTKNIEYYIPDRYLEG
YGISTAGIDYASENGFSLIIALDCGIKSIDKIDYANTLGVDFIICDHHLPGDELPQAIAV
LDPKRSDCPYPFKELAGCGIGFKLAQAYAQKHGLAKETYLQYLDLVMVSIAADIVPVVGE
NRILAYYGLKKLNSNPCEGLRALMEVSGKTENYTITDVVFTLGPRINAAGRIDHAKHAVA
MLLCQVDSNSLEQSELINLKNTERKTYDQDITREALALIGESDILINKKTTVVFNENWHK
GVIGIVASRLTEKYYRPTIVLTKSNGHVAGSCRSVVGFDLYEALSGCAHLLDQYGGHKFA
AGLTMQQHNVDAFVDKFEEIVAASITEELLTPMIRIDAEIELAQIDGKFYRVLSQMGPFG
PENMAPIFVTHNVYLAQHAMAVGQNHLKINIKQQNSPIFEGIAFGLAEFQNLLQPKVPFS
VCYTLEENVWKDKKRLQLNIKGIKVN
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaaagatgggtactggcatcagattgtaatgatgatacggtagcaaaaatagca
gaacaacttaacattgaccgatcacttgcacagatcctcgtgcagcggaatatctgtgat
tttgatcaggcgaaagatttcttcagaccagatcttcatcaccttcatgatcctttttta
atgaaggatatggatgttgcaatcgcccgtatcgaaactgcattagcaacacatgaaaaa
atattgatctatggcgattacgatgtggatggtacaacttctgtagcactggccttcagt
ttcttttcgcagctcactaaaaatatagaatattatatccccgatcgctacctggaaggt
tatggcatttctactgctggaattgactacgctagcgaaaatggattctcgttaattata
gcattagattgtggaataaaatcgatcgataaaatcgattatgccaatactttaggcgtc
gatttcattatctgcgatcaccatttacctggagatgaactgcctcaggctattgccgtt
ttagatcctaaacgttcagactgtccatatccttttaaagaactggccggctgcgggatc
ggttttaaactggcacaggcctatgcacaaaaacatggactagcaaaagaaacttacctc
cagtatcttgatttagtaatggtgagcatcgcggccgatatcgttcctgtagtaggggag
aacagaattttagcttattatgggcttaaaaaactcaactccaatccttgcgaaggctta
cgggccttaatggaagtttcaggcaaaacggaaaattataccattactgatgtggttttc
acattaggtccgcggattaatgctgctggcagaatagaccacgctaaacatgccgttgct
atgctactctgccaggtagatagtaactcactggagcaaagcgaactcatcaaccttaaa
aatacagaacgcaaaacctacgatcaggacattacccgtgaagctttggctttaattggc
gaaagtgatatcctgattaacaaaaaaacgactgtcgtttttaacgagaactggcataaa
ggggttatcgggattgtagcttcgcgtttaactgaaaagtattatcgcccaacgattgta
ttaacaaagtctaacggacatgtagcaggttcttgccggtcggtagttggttttgattta
tacgaggccttaagtggttgcgctcatttattagatcagtatggcgggcataaatttgct
gcaggcttaaccatgcaacaacacaatgtagatgcctttgttgataagtttgaagaaatt
gtggcagcaagcatcacagaagagctgcttacaccaatgatcaggattgacgccgaaatt
gaactggcgcagatagatggcaagttttacagggttttatcacagatggggccattcggg
ccagaaaatatggcacctatatttgttacccataacgtatatctcgcacagcatgccatg
gcagttggccaaaatcatttaaaaattaatataaaacaacaaaattcgcctatttttgaa
ggcattgctttcgggctggccgaatttcaaaaccttttacaaccaaaagtacctttttcg
gtttgttatacgttagaagaaaacgtatggaaagataagaagcgtttgcagttaaatatt
aaaggaataaaagttaattaa
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