Paraburkholderia edwinii: KZJ38_00985
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Entry
KZJ38_00985 CDS
T07588
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
pew
Paraburkholderia edwinii
Pathway
pew03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pew00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
KZJ38_00985 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pew03400
]
KZJ38_00985 (recB)
Enzymes [BR:
pew01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
KZJ38_00985 (recB)
DNA repair and recombination proteins [BR:
pew03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
KZJ38_00985 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_22
AAA_11
AAA_30
AAA_25
4HB_MCP_1
Motif
Other DBs
NCBI-ProteinID:
QYD69007
UniProt:
A0ABX8UKZ6
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All DBs
Position
1:226073..230008
Genome browser
AA seq
1311 aa
AA seq
DB search
MTTSSEAAAALDPLRFPLRGSSLIEASAGTGKTFTIAMLYVRLVLGHAGTGGHGGGEDAK
DIRALTPPEILVVTFTDAATKELRERIRARLVDAAGYFRADPDEVEIEAAALSTGADLLH
DLRAEYAPEHWPGCARRLQLAAEWMDEAAVSTIHGWCNRMLSEHAFDSDSLFSQTLETDQ
SALQAEVVRDYWRTFLTPLDAESAHDVRQWFASPLDLQRVVSRLLAHADLLPQADAPEST
LKEARDKQRAHLARLKENWTSWCDELQTILDEARDKKQFNAQKLNRANCQTWLEKLRAWA
ADPLMARPAFDDKAAVWTRLTHAGLAEIWKVGEPPSHPALDAMEALRDALAAQPTAYYDL
LCHAAHWVSQRFAAEEKKRSQMGFDDLLTRLRDALRSPNGERLADIIRKQYPVALIDEFQ
DTDPIQYEIFDRVYRIKENHADTAIILIGDPKQAIYAFRGADIYTYLAARRACAGRLFTL
KKNFRSTRAMVSAVNRCFEAAEERPAGPGAFLFRDSETGDNPLPFVAAEAAGRRDTLRIA
DGDSPAALTAWWMPPMESGIALSKDAYMRGMAAGCASEMVRLLNLGQAKKAGFVSDSAGA
GAGAKDGAVGGTLGLKPLQPADMAVLVNNGEEARAIRTALAERGVRSVYLSDRDSVFQTE
QAVELRHWLAACAEPDDGRLVRAALATATLGLDFTDLDALTHDEIAWETRVMQFRGYRDS
WRNKGVLPMLRQLLHDFQVPQRLIGRTAGAPVNGERVLTNLLHLAELLQQASTQLDGEHA
LIRYVDEELADQAGGGAGGDARQLRLESDAGLVQVVTIHKSKGLEYPLVFLPFAGNYRPA
KAADMPLKWHDDEGRLKVTLDDVSVLPQVDRERLGEDLRKLYVALTRARYATWVGIAPIP
GIELSAFGYLLSGGRAIVPDELGQLLEQLRLDHADICVAEAPAAGSELFASRESLAERGA
ARTLSRAVREHWWIASYSSLRKVDGVIGGVSAHEPAVSPLAAAGTGEQHPAPDTRGQDVY
QELAGAETPDDFADAAAAWQRTEAAGDYADVQVDSSLHGLPRGADAGTFIHELMEWAATE
GFAEIVKNREMVRDTVARRCSVRGWARWIEPLTEWLLRLLREPLRIPSMSKTVIAPVTLS
ALETYVPEMEFWVATHDVDAQTLDRLVCDMTLDGAVRPALEPAQLNGMLKGFIDLVFEHD
GRFYVADYKSNWLGPDDAAYTTAKMRAQILHSRYELQYVLYLFALHRLLKTRLPDYDYDR
HVGGAVYLFLRGSHAESQGVFVDRPPRELIERLDALFANSVGREELAGDIA
NT seq
3936 nt
NT seq
+upstream
nt +downstream
nt
atgacaacttcatctgaagcggccgcagcgctcgatccactgcggtttccgttgcgcggc
agcagtctgatcgaagcaagtgcgggaacgggtaagacttttacgatcgccatgctttat
gtgcggcttgtgctcgggcatgcgggcaccggcggccacggcggcggcgaggacgctaag
gatatacgtgcgctcacgccgccggaaatccttgtcgtgacgtttaccgatgccgcgaca
aaggaattgcgtgagcggattcgcgcgcggctcgtcgatgcggccggatattttcgtgcg
gacccggacgaagtcgagatcgaggccgctgcgctttcaacaggcgccgatctgctgcat
gacttgcgcgccgaatacgcgcccgaacactggcctggctgcgcgcgtcgtctgcaactg
gcggccgaatggatggatgaagcggccgtgtcgacgattcacggctggtgcaaccgcatg
ctcagtgaacacgctttcgacagcgacagcctgttttcacagacactcgaaaccgatcaa
agcgcgctgcaagccgaggttgtgcgcgactattggcgaacgtttctgacgccgctcgat
gcggagtcagcgcacgatgtgcgtcaatggtttgcgagcccgctggatttgcagcgcgtc
gtgagcagattgctggctcatgccgatctgctgccgcaagctgacgcgcctgaatcgacg
ctaaaagaagcgcgcgacaagcaacgcgcgcacctcgcgcggttgaaagaaaactggacg
tcatggtgcgacgagcttcaaacgatcctcgatgaagcgcgcgacaagaagcagttcaac
gcgcagaagttgaatcgcgcgaactgtcagacgtggcttgaaaaactgcgtgcgtgggct
gccgatccgctgatggccagacccgccttcgacgataaggctgccgtatggacgcgtctc
acgcatgccggactcgcggagatctggaaagtcggtgagccgccttctcatccggcgctc
gacgcaatggaagcactgcgcgatgccctcgccgctcaaccgaccgcttactacgacctg
ctctgccacgccgcgcactgggtctcgcaacgcttcgctgctgaagaaaagaagcgctcg
caaatgggcttcgacgatctgctgacgcgtctacgcgatgcgctacgttcgccgaacggt
gagcgtctcgcggacatcatccgcaagcagtatcccgtggcgctgatcgacgagttccag
gacacggacccgatacagtatgagattttcgatcgcgtctatcgaatcaaggagaaccat
gccgacaccgcgatcatcctgatcggtgatccgaaacaggcgatctacgcgtttcgcggc
gccgacatctatacgtacctcgcggcgcgtcgcgcgtgcgcggggcggctctttacgctg
aagaagaacttccggtcgacgcgcgcgatggtgagcgcggtcaaccgatgctttgaagcg
gccgaggaacggccggccggtcccggcgcgtttctgtttcgtgattcggagacgggagac
aatccgctgccgtttgtggcggccgaggcagcaggtcgccgtgacacgttgcggatcgcg
gacggcgactcgcccgcggccctgaccgcgtggtggatgccaccgatggaaagcggtata
gcgctttcgaaggacgcgtatatgcgcggcatggctgcgggttgtgcgtcggagatggtg
cggttgttgaatctggggcaggcgaagaaagcgggctttgttagcgacagcgccggtgcc
ggtgccggtgcgaaagacggcgccgtcggcggcacgctaggcttaaaaccgctgcaaccg
gcggatatggcggtgctcgtcaacaacggcgaagaggcgcgtgcgatccgcacggcgctc
gccgagcgcggcgtgcgtagcgtctatctctccgatcgcgattcggtgtttcaaaccgag
caggctgtcgagttgcgtcattggcttgccgcctgcgcagaacccgacgacggacgcctc
gtgcgcgccgcactcgcgaccgcgacgctcgggctcgatttcaccgatctcgatgcgctc
acgcatgacgaaatcgcctgggaaacgcgcgtgatgcaattccgcggctatcgcgacagt
tggcgcaacaagggggttctgccgatgctgcgtcagttgctgcacgattttcaggtgccg
cagaggctgatcggacgcacggcaggcgcgccggtgaacggcgaacgcgtgctgacgaat
ctgctgcatctggccgagttgctgcagcaggcgagcacgcagctcgatggcgagcatgcg
ttgattcgctatgtcgatgaagagctggcggatcaggccggcggtggtgcgggtggcgat
gcacgacagctccggctcgaaagcgatgcgggtctcgtgcaggtggtgacgattcacaaa
tcgaaaggcctcgaatatccgctggtgtttctgccgtttgcgggcaattatcggccggcg
aaagcggcggatatgccgctcaagtggcatgacgatgaaggccggctgaaagtgacgcta
gatgatgtatccgtcttgccgcaagtcgatcgcgagcggcttggtgaagatttgcgcaag
ctttatgtggcccttacgcgtgcgcggtacgcgacgtgggtggggattgcgccgatcccc
ggcatcgagttgagcgcgtttggatatctgctttctggcggtagagcgatcgtgccggat
gagctgggacagttgcttgagcagctgcgtctggatcacgcggatatttgcgtggctgag
gcgccggctgccggcagtgagcttttcgcgtcgcgcgaatcgctggccgagcgcggtgcg
gcgcggacgttgtcgcgtgccgtgcgcgagcattggtggattgcgagctattcgagcttg
cgtaaggtcgatggggtgattggcggtgtttcggcgcatgagccggccgttagtccactc
gccgcggccggcaccggtgagcagcatccggcgccggatacgcggggtcaggatgtgtat
caggaacttgcgggtgctgaaacgccggatgatttcgctgatgctgcggctgcctggcaa
cggaccgaagcggctggcgactatgcggatgtgcaggtcgattcctcgttgcatgggctt
ccgcgtggggcggatgcgggaacgttcattcacgagttgatggagtgggcggcgactgag
ggctttgctgaaatcgtcaagaaccgtgagatggtgcgggacaccgttgcgcgtcgctgc
agtgtgcgcgggtgggctcgctggattgagccgcttaccgaatggcttttgaggctgctg
cgcgagccattacgaattccgtcgatgtcgaagacggttatcgcgcccgttacgctatct
gcgttagagacgtatgtgcccgaaatggagttttgggtcgctacgcatgatgtcgatgcg
cagacgctggatcgtctggtctgcgatatgacgcttgatggtgcggtgcgtcccgcactc
gagcctgcgcagctcaatggaatgctcaaagggtttatcgatcttgtgttcgagcatgac
ggccgcttttatgtcgcggactataagtcgaactggctcgggcccgatgatgcggcatac
acgaccgcaaagatgcgcgcgcagattctgcattcgcgctatgagctgcaatacgtgttg
tatctgtttgcgctgcatcggttgttgaagacgcgtctgccggattacgactatgaccga
catgtcggtggcgcggtgtatctgtttctgcgcggtagtcatgcggaaagccagggcgtg
tttgtcgatcggccaccgcgtgagttgatcgagcggctggatgcgctctttgcgaacagt
gtcggcagggaagaactggcgggagatattgcatga
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