Paraburkholderia edwinii: KZJ38_00990
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Entry
KZJ38_00990 CDS
T07588
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pew
Paraburkholderia edwinii
Pathway
pew03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pew00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
KZJ38_00990 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pew03400
]
KZJ38_00990 (recD)
Enzymes [BR:
pew01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
KZJ38_00990 (recD)
DNA repair and recombination proteins [BR:
pew03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
KZJ38_00990 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
RecD_N
AAA_30
UvrD_C_2
AAA_11
SH3_13
Viral_helicase1
AAA_22
NAT10_TcmA_helicase
T2SSE
SLFN-g3_helicase
NTPase_1
AAA_28
AAA_25
nSTAND3
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
QYD69008
UniProt:
A0ABX8UPZ2
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All DBs
Position
1:230005..232353
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AA seq
782 aa
AA seq
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MTKRRVTDSRTGDLFADLPAAPEQTETRTSREDDAVVVGTAASPVTAVSAVAHVSAAAAI
SNADSMLDVLDEWVERGWLRPLDAAFARFLSREASSGVAPLLILAAALASHQLGRGHACL
ELQAALDDPTFVLSLPPDDAIDRMVDAPTHAPTDLLKGVTLEQWLEALDDAALVNSGAGN
TPLVLIGTRLYLRRYWQYEQDVCAGIERRLHASLERAEALDIDAVRATLDVLFPPSNRGV
AGQQAADWQKLACALAARSAFSIVTGGPGTGKTTTVVKLLALLQAIALSDSAARGAGSVG
TVGVAATSDASGTTGRRVRPLRIKLAAPTGKAAARLNESIAGAVANLPIDRLANGVQVLD
AIPKIVTTLHRVLGTRPDSRRFRHDASNPLPVDVLVIDEASMVDLEMMAAVLDALPSTAR
LVLLGDKDQLASVEAGAVLGELCERAARGHYTPQTREWLQSATGEHVDDAMIDENGTALD
QAIAMLRESHRFSSASGIGELALRVNDGDAAGVERVLDEDRADLAMLTCSAGHDALFKAL
VVDGDVGGGDVAGASASATASASVLRHGYRHYLETMHKGQPARDADPAALDRWAAEVLEA
HDAFQLLCAVRRGPWGVDGLNKRIARLLHEEGLIDARGEWYAGRPVLVTRNDYELGLMNG
DIGITLSYPGSADGRGAMRVAFPAADGSGEIKWVLPSRLQAVETVFALTVHKSQGSEFVH
AALVLPDRFSPILTRELVYTGVTRARAYLTLAVPEGKAVLEEAVTAKVQRASGLLAGFGG
GA
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaacggcgtgtcactgactcccggactggcgatctgtttgcggatttgccggcg
gcgcctgagcagacggagacgcggacgtctcgcgaggatgatgcggttgttgtcggtact
gcagcttctccggttactgcggtttctgcggttgcgcatgtgtctgccgccgcagcgatt
tccaatgctgactcgatgcttgacgtgctcgacgaatgggtcgagcgcggttggctgcgc
ccgctcgatgcggcatttgcgcgatttctttctcgtgaggcgtcgtcgggtgttgcgccg
ctgctgattcttgctgcggcgctcgcgagccatcagctcggacgcggtcacgcgtgcctc
gaattgcaggcggcgctcgacgatccaacctttgtgctgtcgctgccgcctgacgatgcg
attgatcgcatggtcgatgcgccgacgcatgcgcctactgatctgcttaagggcgtgacg
ctcgagcagtggctcgaagcgctcgatgatgccgcgcttgtgaattcgggtgcggggaat
acgccgctggttttaatcggtacgcggctttatctgcggcggtattggcaatacgagcag
gatgtttgtgcggggatcgagcggcgattgcatgcgtcgctcgagcgcgcggaagcgctc
gatatcgatgcggtgcgcgctacgcttgatgtgctgtttccgccttccaaccgcggcgtg
gcgggacagcaggcagccgactggcagaagctcgcttgtgcgctggctgcgcgtagtgcg
ttcagcatcgtgaccggtgggcctgggacggggaagacgacgactgtcgttaagttgctg
gctttgctgcaggcgattgcgttgagcgacagcgctgctcgtggagctggtagcgttggt
actgttggcgtggctgccacttccgacgcttctggtactactggacgccgcgtccggccg
ctgaggatcaagcttgccgcgccgaccggaaaggccgctgcacggcttaacgaatcgatc
gcgggcgcggtggcgaatttgcccatcgaccgccttgcgaatggcgtgcaagtgttagac
gccattccgaagatcgtgaccacactgcatcgcgtgcttggcacacgccccgacagccgt
cgctttcgacacgacgcgagcaatccgctgcccgtcgacgtgctcgtaatcgacgaagcg
tcgatggtcgatctggagatgatggccgcggtactcgatgcgttgccgtcgacggcgcgg
ctcgttctgctcggcgataaggatcagttggcgtccgtcgaggcgggcgccgtgctcggc
gagttgtgcgaacgcgcggctcgcgggcactacacgccgcagacgcgcgagtggttgcaa
tcggcgacgggtgagcatgtcgacgacgcgatgatcgatgagaacgggaccgcgctcgat
caggcgattgcgatgctgcgcgaaagtcatcggttctcgtcggcgagcgggattggggag
ctggcgctgcgcgtgaatgacggggatgcggcgggggttgagcgcgtgctcgatgaagac
cgtgccgaccttgcgatgctgacttgctcggcgggacatgatgcgctgtttaaggcgctg
gtggtcgatggggatgtaggtgggggtgacgtcgcgggtgcttcagcgtcagcgactgcg
tctgcgtcggtgcttcgacatggttatcggcactatctcgagacgatgcataaggggcag
cccgctcgggatgccgatcctgcagcattggacagatgggccgctgaagtgctcgaggct
cacgatgcgttccagttgttgtgcgcagtgcggcgcgggccatggggtgtcgatgggctc
aataagcgtattgcacggttgctgcacgaagaaggtctgatcgacgcgcgcggcgagtgg
tatgcggggcggccggtgcttgtcacgcgcaacgactacgagctcgggctgatgaatggc
gatatcggcatcacgctttcttatccgggcagcgccgatggacgcggcgcgatgcgcgtc
gcgtttccggccgcggatgggtcgggtgaaatcaagtgggtgttgccgagtcgtttgcag
gctgtggagactgtgtttgcgttgaccgtgcacaagtcgcaagggtcggagtttgtgcat
gcggcactggtgttgccggatcgatttagtccgattttgacgcgggagctggtttataca
ggagtgacgcgagctcgtgcttacttgacgctagcggtgcctgaagggaaggccgtgctt
gaggaagcggtgacggccaaggtgcagcgggcgagtggattgttggcggggtttggtggc
ggagcttga
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