Paraburkholderia edwinii: KZJ38_03225
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Entry
KZJ38_03225 CDS
T07588
Symbol
thpR
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
pew
Paraburkholderia edwinii
Brite
KEGG Orthology (KO) [BR:
pew00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pew03016
]
KZJ38_03225 (thpR)
Enzymes [BR:
pew01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
KZJ38_03225 (thpR)
Transfer RNA biogenesis [BR:
pew03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
KZJ38_03225 (thpR)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Acb1
Motif
Other DBs
NCBI-ProteinID:
QYD69398
LinkDB
All DBs
Position
1:737549..738169
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AA seq
206 aa
AA seq
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MHHQPNRRTANGSDAATEDPTDDAQRKSLQGWQRCFIALEPDAATRDALAAVPVPAAARR
VPHEQLHLTVTFIGALTHDLGAALIDALAPQTIPLKPAPVTRIEHWPRASHPRLTVALLA
MSDEFVALDWRVRTLMIDLGLPVDARAFRPHVTLGRFRRDAPAAGHAPELKDDLRARFES
LTLYSSTLARTGARYRALASVPVIDA
NT seq
621 nt
NT seq
+upstream
nt +downstream
nt
atgcatcatcagcccaatcgacggaccgcaaacggtagcgatgccgcgacggaagacccg
accgacgacgcccagcgaaaatctttgcaaggctggcagcgctgctttatcgcgctagag
cccgacgccgcgacgcgcgatgcgctcgcggcggtgccggttccggctgccgcgcgtcgc
gtgccgcacgagcaattgcatctgaccgtcacatttatcggtgccttgacgcacgacctc
ggcgccgcgctgatcgacgccctcgcgccacagacaattccactgaagcccgcgcctgtt
acgcgcatcgagcactggccgcgcgcatcgcatccgcggctgacggtcgcgctactcgcg
atgtccgacgaattcgttgcgctcgactggcgcgtccgcacgctgatgatcgatctcggc
ttgccggtcgacgcacgcgcgttccgtccgcatgtgacgcttgggcgcttccgccgcgat
gcgccggccgcgggccacgcgcccgagctgaaagacgatctgcgcgcgcgtttcgaatcg
ttgacgctttattcgagcacgcttgcgcggacgggcgcgcgttatcgcgcgctggcaagc
gtgccggttatcgatgcgtga
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