Paraburkholderia edwinii: KZJ38_06835
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Entry
KZJ38_06835 CDS
T07588
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pew
Paraburkholderia edwinii
Pathway
pew03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pew00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KZJ38_06835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pew03019
]
KZJ38_06835
03009 Ribosome biogenesis [BR:
pew03009
]
KZJ38_06835
Enzymes [BR:
pew01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KZJ38_06835
Messenger RNA biogenesis [BR:
pew03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KZJ38_06835
Ribosome biogenesis [BR:
pew03009
]
Prokaryotic type
rRNA processing factors
KZJ38_06835
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QYD70029
LinkDB
All DBs
Position
1:complement(1552034..1555588)
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AA seq
1184 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIVTRIEPSLEACFVNY
GEDRHGFLPFKEVARQYFRDGVEMRSARIQDALKEGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGDDRQELRETMAQLQLPEGMSIIARTAGIGRSAEELQ
WDLNYLMQLWRAIEAASQSGQSGTPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQ
ARAFMDIVMPDNVSKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV
AIDVNSARATKGADIEETAARTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVE
QRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA
LQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRSEINKIESRFKVAVVLVPNKHLDT
PHYKLERLRHDDARLDDPRASWKMAEEAARELESETGYSKRTEEVKPKQEAAVKGITPEK
PAPSAPVRTAAATPAPVAVTPASGGFIGWLKGLFGMQPAAPVAQPATAEKAARPARGERA
ERGERTGERSGERGGDRNRRGGAARDKVTRGEGAAAGGRQGQQPRREEREPREARETRGG
REGREGRDGRGEGREGREPREGRERENRDNRSDNRGDNRGESREGREPRENRVERAERGQ
DRAAERADTAEAGARGERQERGERRERPDRVERGERRRQQQENVDALSQTEAQAADTAAQ
AEANLTGGALPTEQEAARDGEERRRRRRGRRGGRREREEEGVNVNTAADVAEAEGDGASV
PAEAPVRAPEHAGRHEAQQPVETAVEVVVAAVATQTHVITELQPADETPPLAAEKAATVQ
HVEPVTGQQAPVASEPAATQVQTQFQPSPAQAPVEAAYAPAHAAVQQPAQQPAQAPAQAP
ARAPASHPEAAPAVAFDASSAAPQHADAAPATATPAPAPAVQAAVEPSSAAVTQPDAQPA
TAATPAHVEPAVQQPAAPAYAPAYAPAPQPVEAPRTERFEAAEPAKTTAEPAPVAAATPA
PVAASAAAPSPATAAAHEQPSAAPQAAARANGTHAAAGASPQALQSMLEGVGLVWVNTDA
DKLHAAQQAAAQVVPPARAPRERKPLPPVDTAPMQQVETAKHSQ
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgttcaatgcgacgcagcaggaagaattgcgcgtcgccatcgtcgat
gggcaaaaactcatcgacatcgatatcgaaaccgccggccgcgaacagcgcaaaggcaat
atctacaagggcatcgtcacgcgcatcgagccgtcgctcgaagcctgtttcgtcaactac
ggcgaagatcgccacggcttcctgccgttcaaggaagttgcccgccagtatttccgcgat
ggcgtcgaaatgcgctccgcgcgcatccaggatgcattgaaggaaggccaggaactgatc
gttcaggtcgagaaggaagagcgcggcaacaagggcgcggccctgaccacgtttatctcg
ctcgccggccgctatctggttctgatgccgaacaatccgcgcggcggcggcgtgtcgcgc
cgcatcgagggcgatgaccggcaggaactgcgcgaaacgatggcgcagctgcaattgccc
gagggcatgagcatcatcgcgcgcacggccggcattggccgcagcgccgaggaactgcag
tgggatctgaactacctgatgcagctctggcgtgcgatcgaggcggcctcgcaaagcggc
cagtccggcacgccgatgctgatctatctcgaatcgagcctcgtgatccgcgcgattcgc
gactacttccagcccgatatcggcgaaatcctcatcgatacgaccgaaatccatgaccag
gcacgcgccttcatggatatcgtgatgccggacaacgtcagcaaggtcaagcgctaccac
gacgacgtcccgctcttctcgcgcttccagatcgagcatcagatcgaaaccgcgtactcg
cgcacggtgccgctgccgtcgggcggcgcgatcgtgatcgaccacaccgaggcgctcgtc
gcaatcgacgtgaactcggcgcgcgccaccaagggcgccgatatcgaggaaaccgccgcg
cgcacgaacctcgaagccgccgacgaagtcgcgcgccagctgcgtctgcgcgacctgggc
ggcctgatcgtgatcgacttcatcgatatggagtcggccaagagccagcgcgaagtcgag
cagcgcctgaaagacgcgctcaagcacgaccgtgcgcgcgtgcagatgggcaagatctcg
cgcttcggcctgatggagctgtcgcgccagcggctgcgcccggcactgtcggaaggcagc
cacgtgacctgcccgcgctgtaacggcacggggcatattcgcgataccgaatcgtctgcg
ctgcaagtgctgcggatcattcaggaagaagcgatgaaggaaaacaccgcggcgatccac
tgccaggtgccggtcgaggtgaccgccttcctgctcaacgaaaagcgctcggaaatcaac
aagatcgagtcgcgtttcaaggtcgccgtggtgctcgtgccgaacaagcacctcgatacg
ccgcactacaagctcgagcgtctgcgtcacgacgacgcacgcctcgacgacccgcgtgcg
tcgtggaagatggccgaggaagcggctcgcgagctggaatcggaaaccggttacagcaag
cgcaccgaagaagtgaagccgaagcaggaagcggccgtgaagggcatcacgcccgagaag
ccggcgccgagcgcgccggtgcgcacggcggcggccacgccggcgccggttgcggtgacg
ccggcttcgggcggctttatcggctggctcaagggcctgttcggcatgcagccggcggcg
ccggtcgcacagccggccacggctgaaaaagcagcacgtccggcacgcggtgagcgcgcc
gaacgtggcgaacgcacgggtgaacgtagcggcgagcgcggcggcgaccgcaatcgccgt
ggcggcgcggcgcgcgacaaggtaacgcgcggtgaaggcgcggcggccggcggccgtcag
ggccaacagccgcgtcgcgaagagcgcgaaccgcgcgaggctcgtgagacgcgtggcggt
cgtgaaggacgcgagggtcgggatggtcggggcgaaggccgtgaaggtcgcgagccgcgt
gagggccgcgagcgtgagaaccgtgacaaccgcagtgataaccgcggtgacaaccgcggc
gagagccgtgaaggccgcgagccgcgcgagaaccgcgtcgagcgcgcggaacgcggtcag
gaccgcgccgctgaacgcgccgatacggcggaagccggcgcacgtggcgagcgtcaggaa
cgtggtgagcgccgtgagcgcccggaccgtgtcgagcgcggcgaacgtcgtcgtcagcag
caggaaaatgtcgacgcgctgagccagaccgaagcgcaagccgcggatacggcggcgcag
gcagaagcgaacctgacgggcggcgccctgccgaccgaacaggaagccgcgcgtgacggc
gaggaacgccgccggcgccgccgcggccgtcgtggcggccgtcgtgagcgcgaagaggaa
ggcgtgaacgtcaacacggcagccgacgtcgccgaagcggaaggcgatggcgcaagcgtg
ccggcggaagcgccggtgcgggcgccggaacatgcgggccgtcacgaggcgcagcaaccg
gtggagacggcggtggaagtggtcgtggcagccgttgcgacgcaaacgcatgtcatcact
gaactgcagccggcagacgaaacgccgccgctcgcagccgaaaaggcggcgacggttcag
cacgtggaaccggtgaccgggcagcaagcgcccgtcgccagcgagccggcagcgacgcaa
gtgcagacgcagttccagccgtcgccggctcaggcgccggttgaagcggcttatgcaccg
gcgcatgcagctgttcagcaaccggctcagcaacccgctcaagcaccggctcaggcaccc
gctcgggcaccggcttcgcaccccgaggctgctccggccgtcgcgttcgatgcatcgtcc
gcagcgccgcaacacgctgatgccgcaccggcaactgcaaccccggcaccggccccggcc
gttcaagccgcggtcgaaccgtcgagcgcagccgtaacgcagcccgatgcgcaaccggcc
acggcagccacgccggctcacgtcgaacccgctgtgcaacagcctgcagcaccggcttat
gcaccagcctacgcaccggctccgcagccagttgaagcaccgcgtacggaacgcttcgaa
gctgctgaaccggcaaaaacgacggccgaacctgcgcctgtcgcggccgcgacgccggcg
ccggtagcagcaagcgctgccgccccgagcccagccaccgccgccgctcacgagcagccg
tctgccgcgccgcaagcagcagcacgcgcaaacggcacgcacgcagcggccggcgcgtcg
ccgcaagcgttgcagtcgatgctcgaaggcgtgggcctcgtctgggtgaacaccgacgcc
gacaagcttcacgccgcccagcaggccgccgcgcaagtcgtgccgccggcgcgcgcgccg
cgcgagcgcaagccgctgccgccggtcgatacggcgccgatgcagcaggtcgaaacggca
aagcactcgcagtaa
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