Paraburkholderia edwinii: KZJ38_14385
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Entry
KZJ38_14385 CDS
T07588
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pew
Paraburkholderia edwinii
Brite
KEGG Orthology (KO) [BR:
pew00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pew03019
]
KZJ38_14385 (hrpA)
Enzymes [BR:
pew01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KZJ38_14385 (hrpA)
Messenger RNA biogenesis [BR:
pew03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KZJ38_14385 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_19
AAA_22
NACHT
T2SSE
nSTAND3
AAA_23
Motif
Other DBs
NCBI-ProteinID:
QYD67536
LinkDB
All DBs
Position
1:complement(3258656..3263224)
Genome browser
AA seq
1522 aa
AA seq
DB search
MSNVPKTPAADDVKTTAERGREKLPDSPGKSAGQSAGKSTGESAGRGAGKAGGEAGRETA
RGGGAGREEARRDDARPQQQRRGSDQRSRRAPEQQRHASEQQQRRAPEQQRTPEQQRAPE
QQRAPEQQPPRAPEQQPPRAPEQQQLRKPQQQRTPQSPRPPNDSRESQQPRPQRPPREPR
VVAPNPIPPVTFPEALPVSGRRDEIARAIAGHQVVIVSGETGSGKTTQLPKICLTLGRGL
GAGGSGLIGHTQPRRIAASATGRRIAEELGTPFGEVVGYKVRFTDNLAPGASVKLMTDGI
LLAETQTDPLLKAYDTLIIDEAHERSLNIDFLLGYLKEILPKRPDLKLIVTSATIDAERF
ARHFGSDEKPAPVIEVSGRLYPVEMRYRPVVEESAAVKSAQGTPLRGDRSERGERPKSQR
ETDRDLIDAIVDAADELCREGPGDVLVFLPGEREIRDAAEALRKHHPPHTEILPLFARLS
AAEQERVFRPSNARRIVLATNVAETSLTVPGIRYVIDTGLARVKRYSYRNKVEQLQVESI
SQAAANQRAGRCGRVADGICIRLYEETDYAARPRFTDPEILRSSLAAVILRMKSLHLTAI
ETFPFIEPPPGRAIADGYQLLNELGAVDDDNALTPLGRELARLPLDPRVGRMILAARDQQ
ALREVLIIASALSVQDPRDRPIEAQEQADQAHRRFADERSEFLQWPKIWAWFDEAIAHKK
SNRQLADACRANYLSHLRLREWRDVHSQLLTVVREHGWRLNESDATFEQIHLALLTGLLG
NIGMKADDEPYYLGARGIKFYLWPGSALAKKAGRWVMAAELVETSRLYARGIAKIEPEWV
EKIGAHLLKKSLSEPHWEKRAAQVSAFERAMLYGLTIYHRRRVSFGKQDPARARELFIRG
AFVEGEFETKLAFFAHNRKLLAEIEQLEHKSRRQDVLVDDELIFGFYDEVIPQGIYTGAA
FERWYRDEVNRSGQAEDKLRLLYLSRDDLMRHEAAGVTTELFPKRLTMAGIEMALTYHFE
PGSPRDGVTLAVPLYALNQVDARRAEWLVRGMVKEKAQLLLKSLPQKLRRHVVPLPQYAA
GFAERTSDGARFGAGGLVDALIADVRGETQVALKQSDFKLETLPAHLFMNFKIIDEHGRQ
LAMGRNLAQLRAELGGEAQQQFQKLAASATLVDQAGDALGRGGDARGAGARAGGGAGAGP
AGPGVSAAARGGAGGAGSGAGSAPHTAPAGGGAAAPATALYENLTTWNFGKLPELLEVRR
RGQTLFGYPALVDRGTHCDVEVFDSPDEAARIHRAGLRRLFALQLREPIKYLEKNLPGLR
EMAMQFMARATQEELRDQLIDTALDRACLQDPLPDDDASFHARRDEGRSRLTLLAQEISR
LIGQILGEYATVLKKLAQAKPFAAAYADMQNQLDALIGKRFVVDTPYTQLTHFPRYLKGI
GLRIDKLKADPARDARQFAEFAPLAQHYQRALAQRGGVMDARLAEFRWLLEELRVSLFAQ
ELRTPMPVSVKRLYKVWESMQR
NT seq
4569 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatgtacccaaaactcctgccgctgatgacgtgaaaaccacggctgagcgggga
cgtgagaagttgcctgactcacctggcaaaagcgcaggtcaaagcgctggcaaaagcact
ggcgaaagcgctggcagaggcgctggcaaagccggcggcgaagccggtcgtgaaacagcg
cgtggcggcggtgccgggcgggaagaggcgcggcgcgacgatgcgcgcccgcagcagcag
cggcgcggttcggaccagcggtcgcggcgcgcgccggagcagcagcggcatgcgtcggag
cagcagcaacggcgcgcaccggaacagcagcgcacgccggaacagcagcgcgcaccggag
cagcagcgcgcgccggaacagcagccgccgcgtgcaccggaacagcagccgccgcgtgca
ccggaacagcaacaattgcgcaagccgcagcagcaacgcacgccgcagtcgccacgtcca
cccaacgattcccgcgagtcacaacagccgcgcccgcaacgtccaccgcgcgagccgcgc
gtcgtcgcaccgaatccgatcccgccggttacgttccccgaagcgttgcccgtctcgggc
cggcgtgacgagatcgcgcgcgcgatcgccggccatcaggtggtgatcgtgagcggcgag
accggctcgggcaagacgacgcagctgccaaaaatctgtcttacgctcgggcgcggtctc
ggtgcgggcggcagcgggctgatcggtcacacgcagccgcgccgcatcgcggcgtcggcg
acgggccggcgcattgccgaggaactcggcacgccgttcggcgaagtggtcggctacaag
gtgcgcttcaccgacaatctcgcgccgggcgcgtcggtcaaactgatgacggacggcatc
ctgctcgccgagacgcagaccgacccgctgctcaaggcgtacgacacgctgatcatcgac
gaggcgcacgagcgcagcctcaacatcgatttcctgcttggctatctgaaggaaatcctg
ccgaagcggccagacctgaagttgatcgtcacctctgcgacgatcgatgcggagcgtttc
gcgcgccactttggcagcgacgagaagccggcgccggtgatcgaggtcagcggtcgcctc
tatccggttgagatgcgttatcggccggtcgtcgaggaaagcgcggcggtcaagtcggcg
caaggcacgccgttgcgcggcgatcgttccgaacgtggcgagcgcccgaaatcgcagcgc
gagaccgatcgcgatctgatcgacgcgatcgtcgatgcagccgacgaactatgccgcgaa
ggcccgggcgacgtgctcgtgttcctgcccggcgagcgcgagattcgtgacgcggccgag
gcgctgcgcaagcaccatccgccgcacaccgagatcctgccgctgttcgcgcggctttcc
gcagccgagcaggagcgcgtgttccggccgtccaatgcgcgccgcatcgtgctcgcgacc
aacgtcgccgaaacgtcgctgacggtgcccggcatccgctatgtgatcgatacgggcctt
gcgcgcgtgaagcgctattcgtatcgcaacaaggttgagcagctgcaggtcgagtcgatc
tcgcaagcggccgcgaaccagcgcgcgggccgctgcgggcgtgtcgcggacggcatctgt
atacgtctgtacgaggaaaccgactacgccgcgcgcccgcgtttcacggacccggagatt
ctgcgctcgtcgctcgcggcggtgattctgcggatgaagtcgctgcatctgaccgcgatc
gagacgtttccgtttatcgagccgccgcccggacgcgcgatcgccgacggctatcagctg
ctgaacgaactcggcgccgtcgacgacgataatgcgctgacgccgcttggccgcgagctc
gcgcggctgccgctcgacccgcgcgtgggccgcatgattcttgccgcgcgcgaccagcag
gcgctgcgcgaagtgttgatcatcgcgagcgcgctgtcggtgcaggatccgcgcgaccgg
ccgatcgaggcgcaggagcaggccgaccaggcgcatcgccgctttgccgacgagcgttcc
gagtttctgcagtggccgaagatctgggcgtggttcgacgaagcgatcgcgcacaagaaa
tcgaaccggcagctcgcggacgcgtgtcgcgcgaactacctatcgcatctgcgcctgcgc
gaatggcgcgatgtgcactcgcaattgctgaccgtcgtgcgcgagcacggctggcgcctg
aacgaatcggacgcgaccttcgagcagatccatctcgcgctgctcacaggcctgctcggc
aacatcggcatgaaagccgacgacgaaccgtattacctcggcgcgcgcggcatcaagttt
tatctgtggccaggttccgcgctcgcgaagaaagcggggcgctgggtgatggccgcggaa
ctcgtcgaaacgagccggctttacgcgcgcggcatcgcgaagatcgagcccgagtgggtc
gagaaaatcggcgcgcatctgctgaagaagtcgttgtccgagccgcattgggagaaacgc
gcggcgcaggtcagcgcgttcgagcgcgccatgctgtatgggctcacgatttaccaccgg
cggcgcgtgagtttcggcaagcaggatccggcgcgtgcgcgggagctgtttatccgcggc
gcgttcgtcgaaggcgagttcgagacgaagcttgcgttcttcgcgcataaccgcaagctg
ctcgccgagatcgaacagctcgaacacaagtcgcgccgccaggacgtgctcgtcgacgac
gaactgatcttcgggttctacgacgaggtgattccgcagggcatctataccggcgccgca
ttcgagcgctggtaccgcgacgaggtgaaccggagcggacaggccgaagacaagctgcgc
ctcctgtatctgtcgcgcgacgatctgatgcgccatgaagcggcgggcgtgacgacggag
ctgttcccgaagcggctgacgatggccggtatcgaaatggcgctcacgtatcacttcgag
cccggttcgccgcgcgacggcgtgacgctcgcggtgccgctgtatgcgctgaatcaggtc
gatgcgcggcgcgccgagtggctcgtgcgcggcatggtgaaggagaaggcacaactgctg
ctgaagtcgctgccgcagaagctgcgccgtcatgtcgtgccgttgccgcagtatgcggcg
ggttttgccgagcgcacgagcgacggcgcgcgcttcggcgcgggtggcctcgtcgatgcg
ctgattgccgacgtgcgcggcgagacgcaggtcgcgttgaagcagtcggacttcaagctc
gagaccttgcccgcgcatctgttcatgaacttcaagatcatcgacgagcatgggcggcag
ctcgcgatgggacgcaatctcgcgcagttgcgtgctgagcttggtggtgaagcgcagcag
cagtttcagaagctggcggcgagcgcgacgctggtcgatcaggccggcgatgcgctgggg
cggggtggggatgcacgtggggcgggtgcccgcgccggcggcggggcgggcgctgggccg
gcgggtcccggtgtatcggctgcggcacgcggcggtgcgggtggtgccggcagtggcgcg
ggttccgcgccgcacacggcgcctgccggcggcggcgctgccgcgcctgccaccgcgctc
tacgaaaacctgacgacgtggaacttcggcaagctgcccgagctgctcgaggtacgtcgt
cgcgggcagacgctgttcggctatccggcgcttgtcgaccgcggtacgcattgcgacgtc
gaagtattcgattcgcccgacgaagcggcgcgcattcatcgtgctggcttgcgccgcctg
ttcgcgctgcagttgcgcgagccgatcaaatacctcgaaaagaatctgccgggcctgcgc
gaaatggcgatgcagtttatggcgcgcgcaacgcaggaagaactgcgcgatcagctgatc
gacaccgcgctcgaccgcgcatgtctgcaagacccgctgcccgacgacgatgcgagcttc
cacgcgcgtcgcgacgaaggccgcagccggctcacattgctggcccaggaaatctcgcgg
cttatcggccagattctcggcgagtacgcgacggtgctgaaaaagctcgcgcaggcgaag
ccgttcgcggctgcgtatgcggatatgcagaaccagctcgatgcgctgatcggcaaacgg
tttgtggtcgacacgccgtacacacagttgacgcatttcccgcgctacctgaaagggatc
ggcttacgtatcgacaagctgaaggctgatccggcgcgcgatgcgcggcagttcgcagaa
ttcgcgccactcgcgcaacactatcagcgcgcgcttgcgcaacgcggcggcgtcatggat
gcgcggctcgcggagttccgctggttgctcgaagaactgcgcgtgtcgctgttcgcgcag
gaattgcgtacgccaatgccggtttcggtgaagcggctgtataaggtttgggaatcgatg
cagcggtga
DBGET
integrated database retrieval system
