Paraburkholderia edwinii: KZJ38_14930
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Entry
KZJ38_14930 CDS
T07588
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pew
Paraburkholderia edwinii
Pathway
pew03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pew00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KZJ38_14930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pew03019
]
KZJ38_14930
Enzymes [BR:
pew01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KZJ38_14930
Messenger RNA biogenesis [BR:
pew03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KZJ38_14930
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
HEM4
P-loop_SecA
RPC3_helical
Motif
Other DBs
NCBI-ProteinID:
QYD67629
UniProt:
A0ABX8UKX6
LinkDB
All DBs
Position
1:complement(3383996..3385465)
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AA seq
489 aa
AA seq
DB search
MSDTVVTPSTATFDQFGLSADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTG
KTASFSLPIIQRLLPAASTSASPARHPVRALILTPTRELADQVAANVQAYAKHTPLRSAV
VFGGVDMNPQSAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLP
DLQRILNLLPKERQTLLFSATFSGEIKKLAATYLRDPQTIEVARSNSTATNVTQIVYEVA
EGDKTGAVVQLIRERSLKQVIVFCNSKIGASRLARQLERDGVVATAIHGDRTQSERMQAL
DAFKRGEIEALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSL
FSGNERKQLQDIEKLIKRPLEVQRLVVDAPVRHHHDDRGGRRSRDERDDRGNSRRRSGGG
FERGASHSHRQPPIDDFFLKPYEPSPSALSAASAKRDETDGAPQKPASKQPLAALLGGFG
MPRKTPSSS
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacacagttgtcactcctagcaccgcgaccttcgaccagttcggcctgtcggcc
gacattctgaaagccatcgcggagcagggctacacgacgccgacgccgatccaggcgcag
gcgattcctgtcgtgctggccggccgcgacgtgatgggcgccgcgcagaccggcactggc
aagaccgccagcttctcgctgccgatcatccagcgcctgttgccggcggcaagcacgagc
gcgtcgccggcgcgccatccggtgcgcgcgctgatcctgacaccgacgcgcgaactcgcc
gaccaggtcgccgcaaacgtgcaggcgtatgcgaagcacacgccgctacgcagcgcggtc
gtattcggtggcgtcgatatgaacccgcaatcggcggaactgcggcgcggcgtcgaaatc
ctgattgcgacgccggggcgtctgctcgatcacgtgcagcagaaaaccgcgaatctcggc
caggtgcagatcctcgtgctcgacgaggcggaccgcatgctcgatatgggttttctgccc
gacctgcagcgcatcctgaacctgctgccgaaagagcgccagacgctgctcttctcggcg
acgttctcgggcgagatcaagaagctggcggccacttacctgcgcgacccgcagaccatc
gaagtcgcgcgtagcaactcgacggctaccaacgtcacgcaaatcgtttatgaagtcgcg
gaaggcgacaagaccggcgccgtcgtgcagttgatccgcgagcgcagcctcaagcaggtc
atcgtgttctgcaacagcaagatcggtgcaagccggctcgcgcggcagctcgagcgcgac
ggcgtggtcgccacggcgattcacggcgatcgtacgcaaagcgagcgcatgcaggcgctc
gacgccttcaagcgcggcgaaatcgaagcgctcgtcgctaccgacgtcgcggcgcgcggc
ctcgatatcgccgaactgcccgcggtaatcaacttcgatttgccgttcaacgcggaagac
tacgtgcaccggatcggccgcacgggccgcgcgggtgcgtcgggcgacgcgctgtcgctg
ttcagcgggaacgagcgcaagcagttgcaggacatcgagaagctgatcaagcggccgctc
gaagtgcaacggctcgttgtcgatgcgccggtacggcaccatcacgacgatcgcggcggc
cgtcgtagccgcgacgagcgcgacgaccgcggcaacagccggcgccgttcgggtggaggt
ttcgagcgcggcgcttcgcattcgcaccgtcagccgccgatcgacgacttcttcctgaag
ccgtacgagccgtcgccgagcgcgctgtccgcggcatcggcgaagcgcgacgaaaccgac
ggcgcaccgcaaaagccggcgtcgaagcagccgctcgcggcgctgcttggcggcttcggc
atgccgcgcaagactccttcgtcttcctga
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