Paraburkholderia edwinii: KZJ38_19005
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Entry
KZJ38_19005 CDS
T07588
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pew
Paraburkholderia edwinii
Pathway
pew03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pew00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KZJ38_19005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pew03019
]
KZJ38_19005
Enzymes [BR:
pew01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KZJ38_19005
Messenger RNA biogenesis [BR:
pew03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KZJ38_19005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
B12-binding
Motif
Other DBs
NCBI-ProteinID:
QYD68320
LinkDB
All DBs
Position
1:4286518..4287963
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AA seq
481 aa
AA seq
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MSFASLGLIDPLLRNVQDLNYQTPTPVQAKAIPAVLSGKDVMAAAQTGTGKTAGFALPLL
QRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFIQYGKGLDLRFLAAYGGVSINPQMMS
LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALPAQR
QTLLFSATFTDDIRAMAAGILRNPLNISVSPPNATASKIKQWVVPVDKRNKPDLFMHLVA
ENNWEHALVFVKTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTREVQMLVA
TDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLACADEAPQLAAIE
ALIRQTLPREEEPGFEAEHRVPQTSATGQIIKKPKKPKKPKVPQAAPGTLQVPSKKSRSQ
GGENKSKPAAPRAVAAGKGTSFSSGSPFSVQKPRSKAASKPVAGSPKPAGKPAGGRGKRQ
P
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgcctcacttggcctgatcgatcccttgctgcgcaatgtgcaggatctcaat
taccagacgcctacaccggtgcaggccaaggcgattcctgctgtgctgagtggcaaggac
gtcatggccgccgcacagaccggcacgggcaaaacggcgggttttgcgttgccgctgttg
caacggctagtgcaacacggccccgcggtgtccagcaaccgcgcgcgtgttctggtgctg
gtgcccacgcgtgaactggccgaacaggtgctgcaaagttttatccagtacggcaaaggc
ctcgacttgcgatttctcgccgcctacggcggtgtgagcatcaacccacagatgatgtcg
ttgcgcaaaggcgtggatgtgctcgttgccacgccgggccgtttgctcgatctcaatcgc
cagaacgccgtgcagtttgatcaggtacaaacgctggtgctggatgaagccgaccgcatg
ctggatctgggctttgcgcgcgaactcaatgccgtcttcgctgccctacccgctcagcgc
cagaccctgttgttctccgcgacgtttaccgatgatatccgcgccatggcggcgggcatc
ctacgcaacccgctcaatatcagcgtcagcccgcccaatgccacggccagcaagatcaag
cagtgggtggtcccggtggacaaaaggaacaagcccgacctcttcatgcaccttgtggct
gagaacaactgggagcacgcgctggtgttcgtcaaaacccgcaatggcgtggattacctg
gcagccatgctggatgaagcgggttatgcggtcgacaccatccacggcgataaaccgcaa
cccgcacgcctgcgtgcgctggagcgcttcaagacgcgtgaagtacagatgctggtcgcc
accgacgtagctgcgcgtgggctggatatcgacgacctgccgttggtgattaacgtcgat
ctgccgatcgtggcgcaagactatgtgcaccgtattggccgtaccggccgcgcgggcgcc
agcggcgtggcggtgtccctggcgtgtgccgacgaagcgccacaactcgccgcgattgaa
gcgctgatccggcaaacgctgccccgtgaagaagagccaggttttgaagccgaacaccgc
gtgccgcaaacgagcgcgacgggccagatcatcaagaaacctaagaaaccgaagaagccc
aaagtgccgcaagctgcgcctggcaccttgcaggtgcccagcaagaaatcgcgctcgcaa
ggtggtgaaaataaaagcaagcctgcggcgccacgcgctgtggctgcgggtaaaggcaca
agtttctccagcggtagcccattcagcgtgcaaaagccgcgcagcaaagccgccagcaag
ccagttgcgggttcacccaagccggctggcaaacccgctggtggccgcggcaaacgccaa
ccctga
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